PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.7KG102400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 419aa MW: 47433.4 Da PI: 9.4599

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG102400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26	3.1e-08	50	118	22	91
FAR1 22 skrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 +++ + ++++Cs egk++++ ++ +++++++++ g ka++ +k + g+ t+++ eHnH+l+p Pavir.7KG102400.1.p 50 NRKR-GTDGKDLCCSLEGKHNRKVED-GDRKTSKTSKCDGSKAMVCARKAQdGGRVFFTRIVFEHNHKLNP 118 3333.367799*********9999.5555556666667899999999988999***********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-5	52	118	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-9	226	276	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MESADIAMNR SSPAISLVSR HVMASQVSIP PSATAPQPSP DSVPAGVKKN RKRGTDGKDL 60 CCSLEGKHNR KVEDGDRKTS KTSKCDGSKA MVCARKAQDG GRVFFTRIVF EHNHKLNPSP 120 SMMKHMRAHK VEDPSVMNLV DTMHASQVPH PNVMHVLRSV AGGAENLHLT ERDIQNRRAA 180 HVREERMDDI LKLMAFFREC KANNQQFFYE FQLDDKNIIK NVFWSHATNQ YSMPLAMFVG 240 FNNKLQNVVF GQALLRDEIA DTFEWLFKQL RACMGARILL LSLLFRNELN QLNTQYPGLS 300 ETLTSVINHP LRPIEFEQAW AAMLDKYEVH ESKVLMKLYD ERNMWVGAYF KEIFCGTMNS 360 TQRSESVNSA APVVASTFYG YNNQLSRVYT RAVYKVFASR LKSSTAFRVC PDPNCNIP*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MESADIAMNR SSPAISLVSR HVMASQVSIP PSATAPQPSP DSVPAGVKKN RKRGTDGKDL  60
CCSLEGKHNR KVEDGDRKTS KTSKCDGSKA MVCARKAQDG GRVFFTRIVF EHNHKLNPSP  120
SMMKHMRAHK VEDPSVMNLV DTMHASQVPH PNVMHVLRSV AGGAENLHLT ERDIQNRRAA  180
HVREERMDDI LKLMAFFREC KANNQQFFYE FQLDDKNIIK NVFWSHATNQ YSMPLAMFVG  240
FNNKLQNVVF GQALLRDEIA DTFEWLFKQL RACMGARILL LSLLFRNELN QLNTQYPGLS  300
ETLTSVINHP LRPIEFEQAW AAMLDKYEVH ESKVLMKLYD ERNMWVGAYF KEIFCGTMNS  360
TQRSESVNSA APVVASTFYG YNNQLSRVYT RAVYKVFASR LKSSTAFRVC PDPNCNIP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG102400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Ga02150.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-34	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.7KG102400.1.p