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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.7KG076500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 478aa MW: 50523.1 Da PI: 4.0793 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.4 | 5.2e-11 | 21 | 63 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT +E +ll++a + + g+ W+ Ia+++ ++t +qc +++++ Pavir.7KG076500.2.p 21 NWTDQETLLLLEALEIFKGKEWDEIAEHVA-TKTKEQCMLYFLQ 63 8*****************************.**********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 20.13 | 17 | 69 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.42E-10 | 18 | 69 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-10 | 18 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-7 | 21 | 63 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-10 | 21 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.36E-4 | 36 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MSKADFILME YAEVPGSGGS NWTDQETLLL LEALEIFKGK EWDEIAEHVA TKTKEQCMLY 60 FLQMPIFDSF LDGEDINETP QKITEQDSAE TGTLGVPEDM DVGDNAEGKE SADENTCKKA 120 NANSSETGTK IADQSVSAKV NTMNLGDNDL VSSSIVDESN KSSLMDPANK KKSTDADVSE 180 EQASDFVSGV LRSTFEAVGH FPGKDDLGSF AEAGNSVMAL AGFLASLVER DDAVTSCCSS 240 LRAISAISPA LQLATGHCFI LPDPPSNLKD LTSNYSSCTG GECQGGADGT QNVNDTDKDS 300 SKREESALTL EKEDASPKEC LELSNTEESF VEGPQAEVKS NSTKDPDNPT AASDKMRDGC 360 NTIPGSAASN NTNEPGSVTS QEASAASANA TTNREQLEGE KLSSKELPDD DSPSQGRVVP 420 KEIECAPMAS SSMQQHKSNQ TGSGNTEGYS ELQLLSISAA AVKAKSSWSR RKVISGN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.9239 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.7KG076500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825803.1 | 0.0 | SWI/SNF complex subunit SWI3D-like isoform X1 | ||||
Refseq | XP_025825804.1 | 0.0 | SWI/SNF complex subunit SWI3D-like isoform X2 | ||||
TrEMBL | A0A2T7CRZ8 | 0.0 | A0A2T7CRZ8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J38701.1.p | 0.0 | (Panicum virgatum) |
Link Out ? help Back to Top | |
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Phytozome | Pavir.7KG076500.2.p |