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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7KG075700.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
E2F/DP |
Protein Properties |
Length: 381aa MW: 41151.9 Da PI: 6.9524 |
Description |
E2F/DP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7KG075700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | E2F_TDP | 79.9 | 2.3e-25 | 199 | 264 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
r+++sL llt+kf++ll+ +e+g+++ln++a++L +v ++RRiYDi+NVLe+++liek kn irwkg
Pavir.7KG075700.1.p 199 RYDSSLSLLTKKFINLLQGAENGTLDLNKAAESL---EV--QKRRIYDITNVLEGVDLIEKGLKNMIRWKG 264
6899******************************...99..****************************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005667 | Cellular Component | transcription factor complex |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MDGGSSSLPL PHPPQVYLRR PVPPPGPPVT APPRVHLFRP PVPIPIFSSR PRSAARPPIP 60 PPPAAAPAPA PQVAAAPAPP RPPPAAPTST SADKPPSPPP PAQPQAGLML PPPAPRAEGK 120 GTPMPNPQPN EQNNGGENSQ AEINMGETAQ DKETTSEPGK VIKRVKKLKV SKQSVGTSHG 180 SGVVEGDAGP SLHSINHCRY DSSLSLLTKK FINLLQGAEN GTLDLNKAAE SLEVQKRRIY 240 DITNVLEGVD LIEKGLKNMI RWKGFDMSKP KEIECQISSL KEELESLYDE EFRLDDEIRE 300 AKEKLQALTL DEDKRKSLYL LKEDINKIPH FQGSTLIAIN APHGTCVEVP DPNADLYLYG 360 DLGLQEKQFK NCLESYIGSH *
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Expressed in a cell cycle-dependent manner. Most abundant at the G1/S transition. Lower but constant level in the following phases. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:16514015}. |
Uniprot | TISSUE SPECIFICITY: Expressed in proliferating cells and several differentiated tissues. Detected in inflorescence and shoot apical meristems, cotyledonary vascular tissues, leaf primordia, young leaves, base of trichomes, central cylinder and elongation zone of roots, lateral root primordia, flowers, pistils of immature flowers and pollen grains. {ECO:0000269|PubMed:16514015}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT064737 | 0.0 | BT064737.1 Zea mays full-length cDNA clone ZM_BFb0090H09 mRNA, complete cds. |
GenBank | KJ726878 | 0.0 | KJ726878.1 Zea mays clone pUT3419 E2F-DP transcription factor (E2F5) mRNA, partial cds. |