PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG073600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 515aa    MW: 52762.9 Da    PI: 9.7438
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG073600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.5e-06245267223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           Cp Cg++F+  ++L++H+   H
  Pavir.7KG073600.1.p 245 ACPQCGEVFTKADSLEHHQAIrH 267
                          6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280244267IPR007087Zinc finger, C2H2
PROSITE profilePS501579.494244272IPR007087Zinc finger, C2H2
SuperFamilySSF563995.18E-14269351No hitNo description
Gene3DG3DSA:3.90.228.105.9E-7271350IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene3DG3DSA:3.90.228.105.9E-7396510IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563995.18E-14396510No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MALATLLPSS SASTASKAAA GDHSDSRRHD HDHGSKRKKK PPPSPQPSLS SAPRTPPGAR  60
SQRGMAVAAS SKKSPKVAAA AKNRPPQYQQ HRAQSTKKQA AAAAASSSSS SSSWEQVKSL  120
LSCRSATAAA RVHDPAAPSA LARLRGSGAG ACGASLCAMR DVVDAASSAA SSAAASASAD  180
RDTAPLNRRR AHRAGSSSSS SAAGGGGGGS SHHSSLRGLS GCYECRAINV EPMSRRYPRP  240
RELCACPQCG EVFTKADSLE HHQAIRHAVS ELGPEDSGRN IVEIIFKSSW QKRDRPICHI  300
DRILKVHNAP RTVARFEAYR DAVRSRCRAA AARAAADGNE LLRFHSAPLA CALGLSGTTS  360
LCAAADSSSR SNATDTASSS SAAGAGPSFA AACCGVCTAI RHGFAPWVGA HPLGVRTTAS  420
SGRAHDCGAA SSSSVQADSG CCRAMLVCRV IAGRVRRDGD AACTSAAGEE GPFDSVAGED  480
AASSSVYGNL EELFVANPRA ILPCFVVIYR VLES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG073600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856070.0BT085607.2 Zea mays full-length cDNA clone ZM_BFc0038L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822927.10.0uncharacterized protein LOC112898841
TrEMBLA0A3L6PWI30.0A0A3L6PWI3_PANMI; Uncharacterized protein
STRINGGRMZM2G158141_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-76C2H2-like zinc finger protein