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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pavir.7KG071000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
GRAS |
| Protein Properties |
Length: 329aa MW: 35315.6 Da PI: 11.0589 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.7KG071000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 112.4 | 5.8e-35 | 128 | 252 | 216 | 345 |
GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaer 305
+s + + + ++L++v+ lsPk++vv+e ea+hn + Fl++f eal+yy++lfd+le +++ vEr +lg+e++ vva eg er
Pavir.7KG071000.1.p 128 SSPAAAAKLGRFLQAVRALSPKIMVVAEPEANHNVAAFLKQFEEALNYYVSLFDCLERA-----AAAQRVERLVLGEEVRRVVAREGVER 212
33444445788*********************************************999.....68999********************* PP
GRAS 306 rerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
+erhe+l++W +r+e+aG++ v ++ +++ + ll+ +
Pavir.7KG071000.1.p 213 KERHEQLAQWARRMEAAGMERVGMNFADMMEPRKLLQSLG 252
***********************************99876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MWDVIHPKSG SNVGTVSKPK SPVLAAAISA VIVVIFYARG LWALPLIALA AAAARGFERS 60
LLLPAASSAA RSRCSCAREE RGSCLTPVQI MARSSPSSFG ELLERELNTR LQLSPDSPSV 120
VSSLSPQSSP AAAAKLGRFL QAVRALSPKI MVVAEPEANH NVAAFLKQFE EALNYYVSLF 180
DCLERAAAAQ RVERLVLGEE VRRVVAREGV ERKERHEQLA QWARRMEAAG MERVGMNFAD 240
MMEPRKLLQS LGWGRSSAGR GHLQVHPATT IQHHRRAQPR RPPSRSSPPP PPPTPSPAAP 300
LAAAHAAGPP ESALPSRRAV EPHSAPPP*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC123527 | 1e-33 | AC123527.3 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence. |
| GenBank | AC151480 | 1e-33 | AC151480.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence. |
| GenBank | AK105237 | 1e-33 | AK105237.1 Oryza sativa Japonica Group cDNA clone:001-113-A03, full insert sequence. |
| GenBank | AL935154 | 1e-33 | AL935154.2 Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014967 | 1e-33 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. |
| GenBank | AP014968 | 1e-33 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
| GenBank | FQ377947 | 1e-33 | FQ377947.1 Oryza glaberrima chromosome 12. |
| GenBank | FQ378034 | 1e-33 | FQ378034.1 Oryza glaberrima chromosome 11. |
