PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG056900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 734aa    MW: 85068.5 Da    PI: 6.0912
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG056900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.22.4e-17130210290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          f n Y++ +GF v k +++k+      +k t++C+k+ k++e++ + +++r+++a +rtgC  +l+vk+   gkwe+t +++eHnH+l+
  Pavir.7KG056900.1.p 130 FVNVYGQVTGFVVFKGRNYKH------KKITLQCNKSKKAKENEIR-QRKRKRNAIERTGCPMSLTVKLV-AGKWEITAVQNEHNHPLS 210
                          7799***************99......4678*********999998.9**********************.9***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.8E-15130210IPR004330FAR1 DNA binding domain
PfamPF105517.1E-21334426IPR018289MULE transposase domain
PROSITE profilePS509669.52617653IPR007527Zinc finger, SWIM-type
SMARTSM005750.0054628655IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MSGEAVGRWR AWTAASLPHW SVAIEMESYM AVIAEKAPPL QLSGAGTSML SAIQTADGDE  60
AFIQELEQEN GNHILNDEPD DDLNECQEDT AEAEVDCDED YFFPSPDEVE QTRTPEVGMV  120
FATLEDAHRF VNVYGQVTGF VVFKGRNYKH KKITLQCNKS KKAKENEIRQ RKRKRNAIER  180
TGCPMSLTVK LVAGKWEITA VQNEHNHPLS NSPSLTRFFL SHKYMSEEER NFSRILQETK  240
IKPAKIMQIF RKLRGKFKNI PVSKMAVSNL EQFDRLMKTE NTDIECALEH LRRLQKEQPG  300
FYYAIKTDGD NTVRSIFWTD AQARLDYALY GDFISFDTSY TTIEYDMLFA LVIGMNGYSK  360
TTVFGWALLE DGRAETFSWL FRTFLDVMDG KKPNTILTHQ DSDITKSIAE VFHTAFHRFD  420
MWHVMRKATD ELRSFMAHRA GMETEVTHLV TNSLATEEFE NGWQAMLEKY DAASNAHLDL  480
MYQTRLMWVP VYFKHVFSPF TRSTRCSMSK NAIFKDYVQQ NDTIETFISQ YDIFQEAAVS  540
IEDGDRFEST LKKPTYSTRH PIERHAAEIY TMGMFLRFQK ELLDASAFNA FEKEKDVMYT  600
VKKALDYEDA EFLRDSFSVE VDLKTNTFNC ICSKFERDGI VCCHVLRLFT QFSINKIPEH  660
YIKPRWTKKF REQELQKYCS EKIGSAVSQS TLRYAMIMNR MADSCATVSK DPDRSKIFLE  720
EHERILQKLT ERE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.66950.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG056900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825589.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T7CSA30.0A0A2T7CSA3_9POAL; Uncharacterized protein
STRINGPavir.Ga02637.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-83FAR1-related sequence 5