PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.7KG049200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 256aa MW: 26479.4 Da PI: 4.5371

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.7KG049200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	53.8	4.1e-17	27	61	26	60
zf-Dof 26 lsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 l qPryfCk+Crr W +G +lrnvPvGg +rkn++ Pavir.7KG049200.1.p 27 LGQPRYFCKGCRRNWMQGSTLRNVPVGGRSRKNRA 61 67*******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.9E-13	26	60	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-7	27	53	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MVASPPTEEA AAASNIQANQ LAWQQQLGQP RYFCKGCRRN WMQGSTLRNV PVGGRSRKNR 60 AGGSNSSSAA PPAAAPSSSS NESKKVMNLT QQLLMLPTAT APILTPMPAD FPRVLPSFMS 120 MGGGFEVPSS DYHSLPFPPL SPLFDPGTTP SFLESLTEGL LDSGNNGMTA PPSFGTSDQQ 180 MIGLLQGVDQ TLELPMAAGG GSGLQQWPSL AAQEQQVVGG DGSVDNNCNN NTTNNNGGGA 240 SGGGSGIEYY WQGSI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.7KG049200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004980592.1	1e-106	dof zinc finger protein PBF
TrEMBL	A0A368S7T6	1e-104	A0A368S7T6_SETIT; Uncharacterized protein
STRING	Si026678m	1e-101	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	7e-10	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.7KG049200.1.p