PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG046400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 583aa    MW: 65025.6 Da    PI: 9.9171
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG046400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.3e-1518107399
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                          kvl+p  +++s+ l+++ + a++ +g   +  t  + ++ g++W+v++   +  g+ +l++GW eF+ a+g  +g f+vF++  +   + 
  Pavir.7KG046400.1.p  18 KVLLP--SSTSHKLRISDELARHWDGGAGG--TALVVSPLGKVWRVQV--ARDAGGAFLGRGWPEFAAAHGFGAGWFLVFRH--EpGAGV 99 
                          66644..4555669*******777666433..89999***********..*******************************6..447888 PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                          l+vk+f++
  Pavir.7KG046400.1.p 100 LTVKAFDT 107
                          99999986 PP
2B339.41.1e-12135228198
                          EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          f+ vl+p+++ k g   +p kf++++ ++++ +s   +l ++ ++  +v++  +++sg  ++++GW++F  +ng+ e D+++++++g++ 
  Pavir.7KG046400.1.p 135 FINVLLPPSMEKMG---IPPKFVKNYiSEVEMGSSVTVLLSPLSKFCRVTVGKDQSSGNLFFSGGWSRFLASNGITEYDVLLLRYEGNMV 221
                          56677777777755...******9999777777778888999999******88999999******************************* PP

                          E..EEEEE- CS
                   B3  90 felvvkvfr 98 
                          f  +vkvf 
  Pavir.7KG046400.1.p 222 F--TVKVFG 228
                          9..888875 PP
3B357.72.2e-18315401286
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                           k++++s++l + rl++p++f++++g+  ++++  tl+++       rsW+v++ +  ++++  l++GW++F+ +n++kegD+++F +++
  Pavir.7KG046400.1.p 315 MKKEISSSTLWK-RLSVPRNFCKAIGLWRTSEV--TLRTTAYedhghRSWQVRFLFYENRNSGELSRGWRRFCTDNRIKEGDICTFNVIE 401
                          677777777776.6***********66654443..333322223456*******9955555555**********************9765 PP
4B348.81.3e-15486570286
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg...rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          +k ++++++l+  +l++p++f +++g+  ++++tl+ +  +    rsW+v++    +++r +lt+GW+ F  +n +kegD+++F  ++
  Pavir.7KG046400.1.p 486 LKREISAHMLSD-QLYVPRNFYKAIGLYRASGITLRTTANEDhglRSWQVRF--LVYRNRGTLTRGWRTFWADNMIKEGDICTFNIIK 570
                          566777777766.5***********99999987777666444789*******..66666667**********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.89814108IPR003340B3 DNA binding domain
SMARTSM010191.1E-616108IPR003340B3 DNA binding domain
SuperFamilySSF1019361.65E-1616110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1617110IPR015300DNA-binding pseudobarrel domain
CDDcd100172.38E-1518106No hitNo description
PfamPF023621.3E-1218107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.7E-16129232IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-17130235IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.234132230IPR003340B3 DNA binding domain
CDDcd100175.51E-13133227No hitNo description
SMARTSM010196.7E-9135230IPR003340B3 DNA binding domain
PfamPF023622.6E-10135227IPR003340B3 DNA binding domain
SuperFamilySSF1019363.66E-19309412IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-20311411IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.76313413IPR003340B3 DNA binding domain
SMARTSM010192.9E-9315413IPR003340B3 DNA binding domain
CDDcd100171.50E-16316397No hitNo description
PfamPF023621.5E-15316401IPR003340B3 DNA binding domain
SuperFamilySSF1019362.88E-17480581IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.5E-18483581IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.547484582IPR003340B3 DNA binding domain
SMARTSM010195.2E-7486582IPR003340B3 DNA binding domain
PfamPF023621.3E-12486570IPR003340B3 DNA binding domain
CDDcd100174.48E-10496566No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MGSSSGNRGA IAISRHLKVL LPSSTSHKLR ISDELARHWD GGAGGTALVV SPLGKVWRVQ  60
VARDAGGAFL GRGWPEFAAA HGFGAGWFLV FRHEPGAGVL TVKAFDTTCC LREFSRPITA  120
ANPGGGGGSS HRPQFINVLL PPSMEKMGIP PKFVKNYISE VEMGSSVTVL LSPLSKFCRV  180
TVGKDQSSGN LFFSGGWSRF LASNGITEYD VLLLRYEGNM VFTVKVFGPD GCQKGYKDQG  240
TSSKEQEQSD DKTTFADTKT EEEDPPSSSR KGKGMEKKPG GEENSKRPTS PITSSNKAQL  300
SMNRPVYKVG PPSWMKKEIS SSTLWKRLSV PRNFCKAIGL WRTSEVTLRT TAYEDHGHRS  360
WQVRFLFYEN RNSGELSRGW RRFCTDNRIK EGDICTFNVI ETTLWHVDIT RHGEGQGTIS  420
NELEQSDKTP FSDTEKEDVP SSSRKRKCED KKPDGEENSK RTKGPTTSLN EAPSSIVYEI  480
GPPSWLKREI SAHMLSDQLY VPRNFYKAIG LYRASGITLR TTANEDHGLR SWQVRFLVYR  540
NRGTLTRGWR TFWADNMIKE GDICTFNIIK PMLWHVDIMR HS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG046400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825226.10.0putative B3 domain-containing protein Os04g0347400
TrEMBLA0A3L6PWP90.0A0A3L6PWP9_PANMI; Prolyl 4-hydroxylase 1
STRINGPavir.Ga02236.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-15B3 family protein