PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG033100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 307aa    MW: 33942.6 Da    PI: 8.7916
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG033100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.13.7e-23130191259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                          +Dgy+WrKYG K+++g+ f+rsY+rCt++   gC ++k+v+++ ++dp v+++tY+++H+++
  Pavir.7KG033100.1.p 130 EDGYEWRKYGEKKINGTSFTRSYFRCTYKddtGCLATKHVQQKdSSDPPVFQVTYNNKHTCN 191
                          7***************************99999*******875268**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-23125191IPR003657WRKY domain
SuperFamilySSF1182901.11E-20125191IPR003657WRKY domain
SMARTSM007741.2E-32129192IPR003657WRKY domain
PROSITE profilePS5081118.096130188IPR003657WRKY domain
PfamPF031061.9E-24130190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDCCDRECAV EEVAQVYERI KIQQPFLLRH CSSLPPSTAT QQLAQTHSEA LRALNVALSV  60
MKQQHQQSSA APATPSIKAE PPSHGGAAPC YPEAITTSAA RRGKRRRTTM EEAAAGKTSS  120
WAGLTTVPYE DGYEWRKYGE KKINGTSFTR SYFRCTYKDD TGCLATKHVQ QKDSSDPPVF  180
QVTYNNKHTC NNCTTTTAAS KSSDREIINP HPPNNAAVMM NNVVKSKNHR CWCCLLLSRP  240
PLPPLLSIER CRRRANMISH HFLSAVCSCP AVPQQIIMAS IRHRPQVHAS PATPAMDIII  300
PQEEQT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG033100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827911.11e-100WRKY transcription factor 55-like
TrEMBLA0A2S3ICS11e-98A0A2S3ICS1_9POAL; Uncharacterized protein
STRINGPavir.Ga02545.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-16WRKY family protein