PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG008700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 441aa    MW: 46633.1 Da    PI: 8.7873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG008700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00024113134223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C+ Cgk F++  ++  H+r+H
  Pavir.7KG008700.1.p 113 ECSECGKFFKNDKSMFGHLRSH 134
                          6*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.388112139IPR007087Zinc finger, C2H2
SMARTSM003550.035112134IPR015880Zinc finger, C2H2-like
PfamPF139120.0044113134IPR007087Zinc finger, C2H2
SuperFamilySSF576674.8E-8113134No hitNo description
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SuperFamilySSF576674.8E-8296323No hitNo description
PROSITE profilePS5015710.429301328IPR007087Zinc finger, C2H2
SMARTSM003550.28301324IPR015880Zinc finger, C2H2-like
PfamPF139129.8E-6301325IPR007087Zinc finger, C2H2
PROSITE patternPS000280303324IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSKGGLLLCS VLLLQVCIAL LPLISGSHLT GVRIGGDPLC CQDPIRRARF MSSHGRGELD  60
SHSADSIFDD EEYASIDGGV RVGDEEEEGS LRPPDDGGSG GDKHSSGGGG VVECSECGKF  120
FKNDKSMFGH LRSHPNRGYK GATPPVSKLM KLPPDTATGA ATSSSSSSLP GTDRPPARRS  180
GRYPRLTPLE ILCAYAILAL RYRGNSQGRQ PLPPPSFEKL GATGAQGGAG GSATGNAAAA  240
ELKSNAGAEA GNQLGNRHEH GDFSVKIPKK RRNRNMPKEV VSEARRKKAK LAPIPKEKRP  300
YHCKHCGAEF DTNQALGGHV AGHHREKKVL PRLKGSSGVA AGSQNGKRKV EDDDDDDKDL  360
SRPRERLVSV EISMAQDVPS WQSGHQAAGR EVRQHSERRN DGPAPAVAVA VAATPTPAWA  420
DGGGGSRLWN IDLNEAPEQE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269287KRRNRNMPKEVVSEARRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG008700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813526.11e-133uncharacterized protein LOC112890871
TrEMBLA0A2T8IBR61e-167A0A2T8IBR6_9POAL; Uncharacterized protein
TrEMBLA0A3L6PW681e-167A0A3L6PW68_PANMI; Uncharacterized protein
STRINGPavir.Ga02342.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139162028