PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG006400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 381aa    MW: 42840.8 Da    PI: 5.0057
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG006400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like57.23.6e-18167217455
              G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          ++W++ LH+ F+ a+e L G+  A P++i  lm+v+gL  +h++SHLQkYR 
  Pavir.7KG006400.1.p 167 ICWNEYLHRMFLGALEIL-GEGAASPRNIEILMNVEGLNCKHIASHLQKYRK 217
                          79****************.9*******************************6 PP
2Response_reg51.84.5e-18151221107
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          v++vd+++  ++  r++l   +y ++++ +++ eale l+ +   +Dl l+ ++m +++G+++l   r +++++++i+++ + +++++++
  Pavir.7KG006400.1.p  15 VIVVDEDKQHANSTRSMLCTLNY-HATAYTSPIEALEFLEGHAqeVDLALVAVNMEELHGFQFLDIVRDAHKNVQVIMMSNETTMDTMKR 103
                          799********************.***************777667********************************************* PP

                          HHHTTESEEEESS--HHHH CS
         Response_reg  89 alkaGakdflsKpfdpeel 107
                          ++k+Ga+  + Kp+d   +
  Pavir.7KG006400.1.p 104 CIKLGARFLVNKPIDAHTI 122
                          *************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-2111129IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.7E-2211149No hitNo description
SMARTSM004481.9E-613129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.83114130IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.9E-1615122IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.85E-1416119No hitNo description
SuperFamilySSF466895.2E-12162220IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-16163218IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-16167218IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDERPKLCPA NGLSVIVVDE DKQHANSTRS MLCTLNYHAT AYTSPIEALE FLEGHAQEVD  60
LALVAVNMEE LHGFQFLDIV RDAHKNVQVI MMSNETTMDT MKRCIKLGAR FLVNKPIDAH  120
TINNFWQHLD LKDYSRMDYI KNLLQGNGEA HDLSYQKENT KMKKGYICWN EYLHRMFLGA  180
LEILGEGAAS PRNIEILMNV EGLNCKHIAS HLQKYRKRME AGEQNSASDA RKFRNRASTS  240
KSSKSHQEDP NTSLNSLDIQ HEEMIADEDM PHAQTGSFFD NNAHAAMRRS IQFGTMYDES  300
EYFYYSSGDE ATEDGVDMME DGASASSFTA QVSTAETFSI DGTKDILNNN NSSEKQARHG  360
EKVGKAMMLV DYSDSADAEI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG006400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825245.11e-174two-component response regulator ORR29-like
TrEMBLA0A2T7CTM00.0A0A2T7CTM0_9POAL; Uncharacterized protein
STRINGPavir.Gb02032.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-22response regulator 10