PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7KG006300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 369aa    MW: 41726.3 Da    PI: 6.0732
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7KG006300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like40.65.7e-13169219355
              G2-like   3 rlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           l Wtp L ++F+ a+e LG  e AtP +i  +m+v+++ ++++  HLQk+R 
  Pavir.7KG006300.1.p 169 HLMWTPFLQKKFLYALELLG--EAATPGKIQLIMNVNSIGRKQISAHLQKHRK 219
                          689****************4..67***************************96 PP
2Response_reg35.26.2e-13151221107
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          v++vd++   ++  r++l k ++ +v + +++ eal+ lk++   +D  l  ++m +m+G+++l   r+++++l++i+++   + +++++
  Pavir.7KG006300.1.p  15 VIVVDENLCHANTARRVLVKLDF-QVMVYTSPVEALRFLKDHIkdIDFALAAVNMKEMHGFQFLDISRKSHKNLQVIMMSVDLTWPTMKR 103
                          789999999**************.***************887666*******************9889999******************* PP

                          HHHTTESEEEESS--HHHH CS
         Response_reg  89 alkaGakdflsKpfdpeel 107
                           +++Ga+  + Kp d + +
  Pavir.7KG006300.1.p 104 SVELGARFLVKKPLDANTI 122
                          *************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.99E-1911143IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.3E-1812129No hitNo description
SMARTSM004482.2E-513126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011023.52914130IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.2E-1215123IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.46E-1316114No hitNo description
Gene3DG3DSA:1.10.10.606.8E-12165222IPR009057Homeodomain-like
SuperFamilySSF466896.09E-7168223IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-13170220IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGTQRIGRPS DKLSVIVVDE NLCHANTARR VLVKLDFQVM VYTSPVEALR FLKDHIKDID  60
FALAAVNMKE MHGFQFLDIS RKSHKNLQVI MMSVDLTWPT MKRSVELGAR FLVKKPLDAN  120
TINNIWQHLD LKFYWWEKIE YLFQGIEAKT DDVFESENKL REGKKKVAHL MWTPFLQKKF  180
LYALELLGEA ATPGKIQLIM NVNSIGRKQI SAHLQKHRKK AEKELRNTDA KKCSNDPEIH  240
PTNISDEEMS WDETAGNTQE TQGKTVYEAM RRALQLGTVF DESQLPNDPF GRQASKGEVD  300
MTGDGYGRGD WTCAFGDNSV VSETQNADDA KEVMGSNCDS DKQVPNGDAQ AQVVKLVTYS  360
DSEDGEAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.7KG006300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825246.10.0two-component response regulator ORR29-like
TrEMBLA0A2T8IBS70.0A0A2T8IBS7_9POAL; Uncharacterized protein
STRINGPavir.Ga02356.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.12e-16response regulator 14