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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.7KG006000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 248aa MW: 27180.8 Da PI: 10.0431 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.7KG006000.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 34.7 | 3.1e-11 | 114 | 162 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h +rEr RR+r+ ++f+ L llP++ s K K +i+ Av YI++L+
Pavir.7KG006000.1.p 114 RHIMRERLRRERLSQGFADLHALLPPS---ASSKGGKNDIVGTAVGYIRELE 162
599***********************9...8******************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MADPFFYLGQ DSADEKYLMS LGLVLPPEPP AGSAFEAYQR RPTLLESRLM MMGRECRRHN 60 NSGGGENVHR RMFGYYLRRI ARRDDAAAGA AHSAPADNEA AVVPLPPHSS SRFRHIMRER 120 LRRERLSQGF ADLHALLPPS ASSKGGKNDI VGTAVGYIRE LEGRRGWLRA RNQELLERAA 180 SSRARSGGAG AARNAAGGDM VVKVRDESED FSAQLLTACE AGYHMMSHMC RTSSQTSFVL 240 PAKPLHS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU948863 | 4e-54 | EU948863.1 Zea mays clone 388069 mRNA sequence. |
GenBank | KJ728030 | 4e-54 | KJ728030.1 Zea mays clone pUT6169 bHLH transcription factor (bHLH79) mRNA, partial cds. |