PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG364600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 134aa    MW: 14621 Da    PI: 9.3488
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG364600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.8e-201971156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                         ++y+GVr+++ +g+++AeIrd      ++ r++lg+f+taeeAa+a+++ + +++g+
  Pavir.6NG364600.1.p 19 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRVWLGTFDTAEEAARAYDRKAYAMRGH 71
                         69********.7*********3...2236**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-151971IPR001471AP2/ERF domain
CDDcd000181.95E-261979No hitNo description
SMARTSM003803.0E-312084IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-292079IPR001471AP2/ERF domain
PROSITE profilePS5103222.3522078IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-222079IPR016177DNA-binding domain
PRINTSPR003673.6E-102132IPR001471AP2/ERF domain
PRINTSPR003673.6E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MEGGGGWDDY QGKDGGEPTK YRGVRRRPSG KFAAEIRDSS RQSVRVWLGT FDTAEEAARA  60
YDRKAYAMRG HLAVLNFPAE ARNYARGGSS SSSRQQQQQG EGGTGGGRQV IELEYLDDQV  120
LQEMLKGSDG KKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-31151209114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG364600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822510.18e-66ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC57e-34ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2T7DAY52e-74A0A2T7DAY5_9POAL; Uncharacterized protein
STRINGPavir.Fb02184.1.p2e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-32ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]