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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pavir.6NG344000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 255aa MW: 27361 Da PI: 5.9122 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6NG344000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 40.4 | 5.2e-13 | 95 | 140 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er+RRd++N +f eLr +P+ +++Ka+ L A YI +L
Pavir.6NG344000.1.p 95 SHVEAERQRRDKLNRRFCELRAAVPTV-----SRMDKASLLADAATYIAEL 140
799***********************6.....49**************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 255 aa
Download sequence Send
to blast |
MDELVSSTPP FFSTADHHLL RDLELELLFC NGLDQWMVAD EPLDLDGATW GDDGSGGSAS 60 AGNNDDLSVE PPPPAAPKRR RGRKPRPRAN GPPISHVEAE RQRRDKLNRR FCELRAAVPT 120 VSRMDKASLL ADAATYIAEL RDRVEQLEAE AKQASAATTV AAATTPLLGL GLEEKLEVRV 180 VARDAAALRL TSAARHAPAC LMDALQSLDL PVQHACVTRL GGVTVQDAVV DVPAGLRDER 240 GLHAALLHKL QRSV*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 3e-19 | 93 | 153 | 6 | 66 | Transcription factor MYC2 |
5gnj_B | 3e-19 | 93 | 153 | 6 | 66 | Transcription factor MYC2 |
5gnj_E | 3e-19 | 93 | 153 | 6 | 66 | Transcription factor MYC2 |
5gnj_F | 3e-19 | 93 | 153 | 6 | 66 | Transcription factor MYC2 |
5gnj_G | 3e-19 | 93 | 153 | 6 | 66 | Transcription factor MYC2 |
5gnj_I | 3e-19 | 93 | 153 | 6 | 66 | Transcription factor MYC2 |
5gnj_M | 3e-19 | 93 | 153 | 6 | 66 | Transcription factor MYC2 |
5gnj_N | 3e-19 | 93 | 153 | 6 | 66 | Transcription factor MYC2 |
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