PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG316600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 427aa    MW: 46210.4 Da    PI: 7.3283
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG316600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.8e-32340396360
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++  d++v ei+Y+geHnh+k
  Pavir.6NG316600.1.p 340 DGYNWRKYGQKKVKGSEFPRSYYKCTHPSCPVKRKVETTI-DGQVAEIVYSGEHNHPK 396
                          9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540011.49E-3621240No hitNo description
PROSITE profilePS5060013.99328197IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1301.1E-490191No hitNo description
PfamPF029025.3E-998195IPR003653Ulp1 protease family, C-terminal catalytic domain
PROSITE profilePS5081123.319333397IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-26333397IPR003657WRKY domain
SuperFamilySSF1182901.7E-24336397IPR003657WRKY domain
SMARTSM007743.8E-33338396IPR003657WRKY domain
PfamPF031061.4E-24340395IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGKGSRPAST STGGEKKGEE RVLSHGDVVL IRSDLAILRG PRFINDRIIA FYFAHLSAGL  60
GDDLLLLPPS IPYLFSNLPN PASVAAVAEP LRLASRRLVL LPVNDNPDAS VPEGGSHWTL  120
LVLDNTTSPS GPRFVHHDSI RGAPNLPIAS CLADALRPLL LQSDSRRGAV PVVEGPTPRQ  180
PNGYDCGVYV MAIARAICGW WKNGHGGLRG GDWFEAVRRE VDADSVKAMR GELLQLITTL  240
IQDKANASST SEGNKTNFSS TGSPPITVLE ETVLVKPKAT WFPSLPSELP TEITATIFQD  300
AGSETTCEEM EVETEQANCC GHLKTCHTVK KPTGSRLSFD GYNWRKYGQK KVKGSEFPRS  360
YYKCTHPSCP VKRKVETTID GQVAEIVYSG EHNHPKPRPH RTPLSSTSTA EVVVCGVHGT  420
EDTMQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xt9_A6e-25222405209Sentrin-specific protease 8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG316600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683533.10.0uncharacterized protein LOC101761160
TrEMBLA0A2T7D9S41e-164A0A2T7D9S4_9POAL; Uncharacterized protein
STRINGPavir.Fa00406.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.23e-31WRKY family protein