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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG316200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 398aa MW: 42031.7 Da PI: 5.7433 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.2 | 3.5e-09 | 210 | 257 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Pavir.6NG316200.1.p 210 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 257 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.69E-10 | 204 | 261 | No hit | No description |
SuperFamily | SSF47459 | 2.36E-16 | 204 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.301 | 206 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.6E-16 | 206 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-6 | 210 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.0E-10 | 212 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MEGRAGGGDY IASLLSSAPR LDFGVLGSVP AMLDAAAAGG DGGEDCLERF CGDPGFAERA 60 ARLSSFSGQR FAGAGAAAGL FGLPLPAPAA SNGEFAGSRE ASSVSDPASA MKDANAKKRK 120 APAAAKGKGK ESSAQAGDQK DPDAKRCKTE GAEGKKEESP VKPKSEQAGS DSSVEDGGHK 180 SAGKGKNAKP VEPPKDYVHV RARRGQATDS HSLAERVRRE RISQRMKVLQ DLVPGCNKVI 240 GKALMLDEII NYVQSLQRQV EFLSMKLATV NPLDFSNLPT LLQKDMFQAC GPSASSVFSL 300 ESSSSGFPFS DQGDVFQSFV QNGMENQCGL NPLDLALSQA TNGQYAFQDG TPSTNLQQRN 360 FWEDDLQSVF HIDNGQSQEE NGCFHGQLQA GHMKMEF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.9890 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG316200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821024.1 | 0.0 | transcription factor bHLH78-like isoform X1 | ||||
TrEMBL | A0A3L6PMB3 | 0.0 | A0A3L6PMB3_PANMI; Transcription factor bHLH78-like | ||||
STRING | Pavir.Fb01965.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP919 | 38 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 3e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG316200.1.p |