PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG304000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family EIL
Protein Properties Length: 638aa    MW: 69977.6 Da    PI: 6.9101
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG304000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3401.51.1e-122383921349
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          eel +rmwkd+++lkr+ker+++l  ++++   ++k++k+++qa rkkm+raQ giLkYMlk +evcna+GfvYgiipekgkpv gas++
  Pavir.6NG304000.1.p  38 EELARRMWKDKIKLKRIKERQQKLALQQSE-SVKSKTKKISDQALRKKMARAQNGILKYMLKLVEVCNARGFVYGIIPEKGKPVGGASEN 126
                          8*********************98766666.666788***************************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HH CS
                 EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelw 180
                          +raWWkekv+fd+ngpaai+ky+ +n +ls++++     ++++hsl+ lqD+tlgSLLsalmqhc+p+qrr+pl+kgv+pPWWP+G+e+w
  Pavir.6NG304000.1.p 127 IRAWWKEKVKFDKNGPAAIAKYELENSMLSKSNG-----TKNQHSLM-LQDATLGSLLSALMQHCSPQQRRYPLDKGVPPPWWPSGNEAW 210
                          ******************************6554.....58899996.8***************************************** PP

                          HHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX....XXX CS
                 EIN3 181 wgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah....sss 266
                          w +lgl+k  g ppykkphdlkkawk +vL  vikhm+p++++ir+++r+sk+lqdkm+akes ++l vl++eek ++++       +++
  Pavir.6NG304000.1.p 211 WTALGLPKGEG-PPYKKPHDLKKAWKAGVLMGVIKHMAPNFDKIRDHVRKSKCLQDKMTAKESLIWLGVLQREEKSIHSFGRAalyiTHQ 299
                          ***********.9**************************************************************998887765444336 PP

                          XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXX CS
                 EIN3 267 lrkqspkvtlsceqkedvegkkeskikhvqavktta............gfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifa 344
                          +++++++ t+s+++++dv+  +++  ++++++++ +            ++ v ++r++ + +++ vs++e+ +  q+++ ++ +   i +
  Pavir.6NG304000.1.p 300 STSGDKNDTYSSSDEYDVDRLEQPPRSTSSKEDEGDtqpvlqirgpqiSTRVKKRRRRDKPSNRVVSKEEM-TKSQQQKSPS-DHPPIAE 387
                          67799**************5555554666665555568999999998766666666655556666665554.5555555553.4444555 PP

                          XXXXX CS
                 EIN3 345 dknsi 349
                          d+ ++
  Pavir.6NG304000.1.p 388 DEVEV 392
                          55544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048739.2E-11838283No hitNo description
Gene3DG3DSA:1.10.3180.101.0E-64159288IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167684.18E-57168285IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MDHLGILASE LGDASDFDVD GINSLSENDV SDEEIDAEEL ARRMWKDKIK LKRIKERQQK  60
LALQQSESVK SKTKKISDQA LRKKMARAQN GILKYMLKLV EVCNARGFVY GIIPEKGKPV  120
GGASENIRAW WKEKVKFDKN GPAAIAKYEL ENSMLSKSNG TKNQHSLMLQ DATLGSLLSA  180
LMQHCSPQQR RYPLDKGVPP PWWPSGNEAW WTALGLPKGE GPPYKKPHDL KKAWKAGVLM  240
GVIKHMAPNF DKIRDHVRKS KCLQDKMTAK ESLIWLGVLQ REEKSIHSFG RAALYITHQS  300
TSGDKNDTYS SSDEYDVDRL EQPPRSTSSK EDEGDTQPVL QIRGPQISTR VKKRRRRDKP  360
SNRVVSKEEM TKSQQQKSPS DHPPIAEDEV EVTQRNDNPP ETVSTAISDM NIFYPMDVVG  420
MTNQATSLKH VPTIGSLQQH ADSQGNFLTS GAAMNNCNSN QDASAALNNN SKQAASADLN  480
NYSSTQAARA AQSSTSLSDP PLAYEGSDDI VNSWLAHSFQ QDIDHGPIGV NPSPVVQPST  540
MQPPLPLPMD HHAPIVGTGT LSVDGSYSYP TAGSGHVGTV ASEAHQLMGG SFFGEAADKF  600
PGNSFGTLPL SLIPIGSPIH YLDGFLDDDE LMPYLGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A3e-5816929015136ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1351356KKRRRR
2353358RRRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.8990.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG304000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973869.10.0ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A3L6Q4C50.0A0A3L6Q4C5_PANMI; ETHYLENE INSENSITIVE 3-like 3 protein
STRINGPavir.Fb01951.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37203779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-134ETHYLENE-INSENSITIVE3-like 3