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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.6NG295600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
C2H2 |
Protein Properties |
Length: 404aa MW: 44032.6 Da PI: 6.7183 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6NG295600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 16.3 | 2.8e-05 | 235 | 254 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C k+F+r n++ H+
Pavir.6NG295600.1.p 235 FSCPVCYKTFNRYNNMQMHM 254
89*****************9 PP
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2 | zf-C2H2 | 12.6 | 0.00042 | 321 | 341 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C +Cgk F k + ++H +++
Pavir.6NG295600.1.p 321 CRKCGKAFAVKGDWRTHEKNC 341
*****************9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 404 aa
Download sequence Send
to blast |
MEDPYTSFFK NPYYYYTTSF PAAAPAPHIP PPLPPYTSRY PPSSAATPQY PACFFQPQPT 60 LPPLHDSPPS PPLREALPLL SQSPTLGASR PRHVAADYDA DDFLREVVGS SATPSARAPL 120 FADLNCMPSC CDDGDPMDVE AGSSTDDAAV ALRIGLPAAP ANGCGGTEPD LLSGLTGRAC 180 GGMEPEEDEE ECKVDAGDGD EVVPLGFAST PIGRLNKGQY WIPTPAQILI GPTQFSCPVC 240 YKTFNRYNNM QMHMWGHGSQ YRKGPESLRG VQPTAMLRLP CYCCAAGCRN NIDHPRARPL 300 KDFRTLQTHY KRKHGLKPFL CRKCGKAFAV KGDWRTHEKN CGRLWYCLCG SEFKHKRSLK 360 DHARAFGHGH GHGAFGCNAD EMVDDDDGAV SEIEQDCCRS SAR*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FP096907 | 0.0 | FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence. |