PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

ZF-HD

Protein Properties

Length: 293aa MW: 30109.5 Da PI: 6.9543

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG285900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.5	2.8e-32	69	122	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e++ Pavir.6NG285900.1.p 69 ARYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESD 122 79***********************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.9E-29	69	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.2E-30	70	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	7.0E-25	70	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.963	71	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	7.72E-21	219	290	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-32	220	291	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.1E-27	229	285	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MDFDEHDDGD GDEEMTPMPV TSSYDAPMQP GLGLAGGGGT PKPGDSAGGS FRTPGGGGGG 60 GGGGGGGGAR YRECLKNHAV GIGGHAVDGC GEFMAAGEEG SIDALRCAAC GCHRNFHRKE 120 SDSPTGGVSP ADPAAALSPA AITAYGAAAA HHHPFSPYYR TPAGYLLHQH QQLAAAAAGH 180 MQRPLALPST SHSGRDEGDD MSGLIGPLMV APMVGMSLGS GGGASGSGKK RFRTKFTQEQ 240 KDRMLGFAEQ LGWRIQKHDE AAVQQFCEEV GVKRHVLKVW MHNNKHTLGK KP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	3e-28	230	287	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG285900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU963277	1e-140	EU963277.1 Zea mays clone 260287 ZF-HD protein dimerisation region containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001149424.2	1e-152	uncharacterized protein LOC100283050
Swissprot	A2YWA6	1e-124	ZHD2_ORYSI; Zinc-finger homeodomain protein 2
Swissprot	Q6ZB90	1e-124	ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBL	A0A1D6KLI5	1e-151	A0A1D6KLI5_MAIZE; ZF-HD protein dimerization region containing protein
TrEMBL	A0A317YC70	1e-151	A0A317YC70_MAIZE; Zinc-finger homeodomain protein 2
STRING	GRMZM2G346920_P01	1e-152	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	8e-53	homeobox protein 21

Link Out ? help Back to Top
Phytozome	Pavir.6NG285900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]