 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Pavir.6NG280000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 283aa MW: 29519.6 Da PI: 4.6934 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.6NG280000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.7 | 4.8e-19 | 56 | 109 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++++q+++Le+ Fe ++++ e++++LA lgL+ rqV vWFqNrRa++k
Pavir.6NG280000.1.p 56 KKRRLSTDQVRALERSFETENKLEPERKARLALDLGLQPRQVAVWFQNRRARWK 109
45689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 132.4 | 1.7e-42 | 55 | 147 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
ekkrrls++qv++LE+sFe+e+kLeperK++la +LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L++++++L +e
Pavir.6NG280000.1.p 55 EKKRRLSTDQVRALERSFETENKLEPERKARLALDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDALRADHDALRRDKDTLLAE 144
69**************************************************************************************99 PP
HD-ZIP_I/II 91 lke 93
+ke
Pavir.6NG280000.1.p 145 IKE 147
987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MKRPSGSVSG GSGGGGSPGL LPVVHSDDGF GGVGVEEADE DMVLCGGGGG GGGGEKKRRL 60
STDQVRALER SFETENKLEP ERKARLALDL GLQPRQVAVW FQNRRARWKT KQLERDYAAL 120
RHSYDALRAD HDALRRDKDT LLAEIKELKA KLGDEDAAAS FSSVKEEPAA SGVEPPAAAA 180
QGSSDSDSSG VVNDAEMTAA PEKASVHPPA AAAAAAGAEA EAVVPGAALH HGVVFFHGHP 240
LKVEDDEAAF LGDDDAACGG FFADLQPPPS LPWWTEPTEH WA*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 80 | 86 | ERKARLA |
| 2 | 103 | 111 | RRARWKTKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
