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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.6NG278200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 390aa MW: 40488.6 Da PI: 4.7189 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6NG278200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 44.4 | 2.9e-14 | 139 | 189 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++Y+k++
Pavir.6NG278200.1.p 139 QRMTHIAVERNRRKQMNEYLAALRSLMPPS---YVQRGDQASIIGGAINYVKEM 189
79****************************...9*****************997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MALEAVVFSE GLFGSWAMAA APGGGGWSWG HGENEHGGAV EGVMDLEGGA VAAYWEVGAS 60 SSVMMQGADQ QEPDASLSAA ALPENGGGGG NNAAAGGGAV FSQEVAVAAA AAPMSPPPAG 120 RRKRRRTRSV KNREEVESQR MTHIAVERNR RKQMNEYLAA LRSLMPPSYV QRGDQASIIG 180 GAINYVKEME QLLQSLEARK HARRQDLSSP GAAGDADAAA GPFAGFFTFP QYSMSAGAGG 240 APFPATANTP PEDGEGRPKN ADADGNHGDG DDAAASGSRP SSVADVEVTM VESHASLKLL 300 SRRRPRQLLR LVAGLQGHRL TVLHLNATSD DARRMALYSL SLKVEDDCAL LSVDDIAAAV 360 HGIVEAVDRE EGGGAELHGS HADDDDEEE*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 121 | 125 | RKRRR |
2 | 121 | 126 | RKRRRT |
3 | 139 | 150 | RMTHIAVERNRR |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK107626 | 4e-92 | AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence. |
GenBank | HQ858861 | 4e-92 | HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds. |