![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.6NG277200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 298aa MW: 30491.9 Da PI: 6.9542 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.5 | 2.9e-32 | 71 | 124 | 4 | 58 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e++ Pavir.6NG277200.1.p 71 ARYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESD 124 79*************************9.999********************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 5.0E-29 | 71 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-25 | 72 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.4E-30 | 72 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.963 | 73 | 122 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.17E-21 | 220 | 295 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-32 | 223 | 296 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.2E-27 | 234 | 290 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 298 aa Download sequence Send to blast |
MDFDEHDDGD GDEEMTPMPV TSSYDAPMQP GLGLAGGGGT PKPGDSAGGS FRTPGGGGGG 60 GGGGGGGGGG ARYRECLKNH AVGIGGHAVD GCGEFMAAGE EGSIDALRCA ACGCHRNFHR 120 KESDSPTGGV SAADPAAALS PAAITAYGAA VAHHHPFSPY YRTPAGYLLH QHQQLAAAAA 180 GYMHRPLALP STSHSGRDEG DDMSGLIGPL MVAPMVGMSL GSGGGASGSS GSGKKRFRTK 240 FTQEQKDRML GFAEQLGWRI QKHDEAAVQQ FCEEVGVKRH VLKVWMHNNK HTLGKKP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-28 | 235 | 292 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.6NG277200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU963277 | 0.0 | EU963277.1 Zea mays clone 260287 ZF-HD protein dimerisation region containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149424.2 | 1e-150 | uncharacterized protein LOC100283050 | ||||
Swissprot | A2YWA6 | 1e-123 | ZHD2_ORYSI; Zinc-finger homeodomain protein 2 | ||||
Swissprot | Q6ZB90 | 1e-123 | ZHD2_ORYSJ; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A1D6KLI5 | 1e-149 | A0A1D6KLI5_MAIZE; ZF-HD protein dimerization region containing protein | ||||
TrEMBL | A0A317YC70 | 1e-149 | A0A317YC70_MAIZE; Zinc-finger homeodomain protein 2 | ||||
STRING | GRMZM2G346920_P01 | 1e-150 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3950 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02540.1 | 2e-44 | homeobox protein 21 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.6NG277200.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|