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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.6NG274300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 258aa MW: 27621 Da PI: 7.5016 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6NG274300.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 26.5 | 1.2e-08 | 177 | 217 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r RR+ri +++ L++l+P +K++ a++L +A++Y+k L
Pavir.6NG274300.1.p 177 ARMRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 217
699*****************87.....8****************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MDFDMLNSHP EAQLELMNAM LQLEQLTAFP DHHGAMMMVP STPPPSPPCM QQQAHHHFSS 60 SVPHHMSVGG AANGRATYHD HHQYYSSSAV TSHASCNGSA RSEYAAHQDY PAAAGGGGGG 120 GGNGGMDDGA TAVGSSAMRE MIFRVAALQP VNIDPEMVRP PKRRNVRIST DPQSVAARMR 180 RERISERIRI LQRLVPGGTK MDTASMLDEA IHYVKFLKTQ VQSLERAAAA SGRRPAPPAA 240 DDDGAAAPYP GRFSGQW*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 158 | 163 | RPPKRR |
2 | 177 | 182 | RMRRER |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ726973 | 1e-155 | KJ726973.1 Zea mays clone pUT3674 bHLH transcription factor (bHLH113) gene, partial cds. |