PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG267200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 275aa    MW: 28800.8 Da    PI: 9.3852
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG267200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-057998221
                         EETTTTEEESSHHHHHHHHH CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                         +C+ Cgk F+++  L  H+r
  Pavir.6NG267200.1.p 79 PCTECGKEFTSWKALFGHMR 98
                         5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.97278105IPR007087Zinc finger, C2H2
SMARTSM003550.006378100IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.67E-778100No hitNo description
Gene3DG3DSA:3.30.160.601.6E-480100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
PfamPF139122.0E-880102IPR007087Zinc finger, C2H2
SuperFamilySSF576674.67E-7182209No hitNo description
SMARTSM003551.2187209IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-10187211IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369187209IPR007087Zinc finger, C2H2
PROSITE patternPS000280189209IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MATPVQPAAS PPPRPPPPPH RPHHDTTLTL ALALPPPPFA CALSPRPLQA RRPRADGVAS  60
SSSSAFARVR SSPTGDPPPC TECGKEFTSW KALFGHMRCH PERQWRGITP PPHFRHQHRQ  120
AAGDQFTVQE REIAASLLML AGARPGVGKG KKSTLVASSS AKKESCSTPT SSPTTTAAAP  180
PPRCDGHKCS VCARGFATGQ ALGGHKRCHW ERACDEGMEV AAPSSCSTLA TSGAAPPSTT  240
LDLNLPPPGT MPPLPRKIDE DGSVNPALDL KLGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG267200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682354.11e-127zinc finger protein ZAT3
TrEMBLA0A2T7D8W91e-133A0A2T7D8W9_9POAL; Uncharacterized protein
STRINGPavir.Fb01832.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-29C2H2-like zinc finger protein