 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.6NG247900.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 348aa MW: 36120 Da PI: 7.0924 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.6NG247900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.8 | 3.8e-18 | 167 | 221 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F++++++++++++ LAk+l+L rqV vWFqNrRa+ k
Pavir.6NG247900.1.p 167 RKKLRLSKEQSAFLEESFKEHSTLNTKQKATLAKQLNLRPRQVEVWFQNRRARTK 221
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 125.2 | 3e-40 | 167 | 257 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rlskeq+++LEesF+e+++L++++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++al+een+rL+ke +eLr +
Pavir.6NG247900.1.p 167 RKKLRLSKEQSAFLEESFKEHSTLNTKQKATLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEALTEENRRLHKELAELR-A 255
69*************************************************************************************9.6 PP
HD-ZIP_I/II 91 lk 92
lk
Pavir.6NG247900.1.p 256 LK 257
65 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MELGLSLGEP DAGRAAPELG LGLGVGAAGR GEEGGRASAA AGAGPRWWAT PEPAVRLSLV 60
SSSLGLHWPD EGGRSSEVPA RGFDVNRAPS GAAGASALAA PEEEDDEEDP GAGALSSSSP 120
NDSAGSFPLD LGRRAASHAE GAAAARAGGE RSSSRASDED EGTSNARKKL RLSKEQSAFL 180
EESFKEHSTL NTKQKATLAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCEALT 240
EENRRLHKEL AELRALKTAP PFYMHLPATT LSMCPSCERV ASNPTSAAST SAPASSAPPA 300
TAAAAAATAT TARGEHRPSS FAALFAATRS FPLASQPRPP APASNCL*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 215 | 223 | RRARTKLKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
