PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.6NG244700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GeBP

Protein Properties

Length: 205aa MW: 22999.9 Da PI: 10.0648

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG244700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	38.7	2.8e-12	3	49	51	97
DUF573 51 ksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 k l++K rrLK+K+k +vk+ak+g+ p++ +ehd++++elskk+W+ Pavir.6NG244700.1.p 3 KAALSDKGRRLKHKYKLQVKRAKNGRVPDLPTEHDRSVYELSKKVWR 49 6789******************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.5E-11	3	48	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MDKAALSDKG RRLKHKYKLQ VKRAKNGRVP DLPTEHDRSV YELSKKVWRL KSLEGRSLVH 60 EDTGDAESNE EQGIKENDED TDNGGEHHDR TSKKPKTSRF ENGNDNATLS VGRASHGDGS 120 GRDSAEKGKQ IYPYLWAAVE ELSKEHPSGP IFRKVFGLLE KSKARAIEEK LRKFRMSVIR 180 LQLNRMDLTK LSVGMVLDAL GGAY*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.20291	1e-146	callus\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG244700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821021.1	1e-126	serine/arginine repetitive matrix protein 1-like
TrEMBL	A0A2S3I358	1e-125	A0A2S3I358_9POAL; Uncharacterized protein
STRING	Pavir.J05211.1.p	1e-144	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2671	35	87

Link Out ? help Back to Top
Phytozome	Pavir.6NG244700.1.p