PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG235900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 302aa    MW: 32352.6 Da    PI: 4.9222
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG235900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483.1e-152576155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  Pavir.6NG235900.2.p 25 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 76
                         89****99**********988422...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-102575IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-172585IPR016177DNA-binding domain
CDDcd000183.98E-222585No hitNo description
PROSITE profilePS5103217.7412684IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-172684IPR001471AP2/ERF domain
SMARTSM003804.1E-262690IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEGQPREEYI GALRRRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVLGNK YLYLGTYATQ  60
EEAAVAYDIA AIEHRGLNAV TNFDIGHYVS HWQRHRHGHG GGSLGATDAA PVVPFQLPPP  120
DDDSPERPAA AELDETTGAA GFHDGDDHPQ RQTAACPFLG DGAQLVADRA GPPARHAAPT  180
PSALDLLLQW SKFKEMMEQV SAAAMVEAGS NSSSSAAASS ASSSASPQPP LSPQRQPEIR  240
GGTAAPCGFP DDVQTFFDLE NEDAMGFTFA EVDTFLFGDL GEYAAPMFQY RDLDVWSALD  300
G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG235900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820075.11e-173AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2S3I2X81e-172A0A2S3I2X8_9POAL; Uncharacterized protein
STRINGPavir.Fb01620.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-35AP2 family protein