PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG231300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 153aa MW: 16142.2 Da PI: 10.1905 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68 | 1.7e-21 | 33 | 83 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 + +GVr+++ +gr++AeIrdp r +r++lg+f+t+eeAa+a++aa++kl+g+ Pavir.6NG231300.1.p 33 RLRGVRRRP-WGRYAAEIRDP---A-RkARVWLGTFDTPEEAARAYDAAARKLRGP 83 679******.**********8...2.35**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 19 | No hit | No description |
CDD | cd00018 | 1.35E-19 | 32 | 92 | No hit | No description |
Pfam | PF00847 | 1.5E-15 | 32 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-22 | 33 | 91 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.2E-32 | 33 | 96 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.802 | 33 | 90 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 34 | 45 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-30 | 35 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MAPRRSPSPA GSSSSGGGCS AERAAAEQQQ QPRLRGVRRR PWGRYAAEIR DPARKARVWL 60 GTFDTPEEAA RAYDAAARKL RGPRAATNYP AAADDSPCLF LDPAPTKTVV RQFLPPLKGA 120 DQERSCGYPG AAAASVGLGL DLNLPPPAEM VM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 30 | 90 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.27933 | 5e-93 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG231300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU949013 | 8e-73 | EU949013.1 Zea mays clone 393795 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821653.1 | 2e-44 | ethylene-responsive transcription factor 8-like | ||||
Swissprot | Q9FE67 | 9e-29 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | A0A3L6RFS6 | 6e-49 | A0A3L6RFS6_PANMI; Ethylene-responsive transcription factor 11-like | ||||
STRING | Pavir.Fa01728.1.p | 4e-37 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14446 | 10 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28370.1 | 4e-14 | ERF domain protein 11 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG231300.1.p |
Publications ? help Back to Top | |||
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