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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.6NG198000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
WOX |
Protein Properties |
Length: 264aa MW: 28498.8 Da PI: 8.1343 |
Description |
WOX family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6NG198000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 48.8 | 1.2e-15 | 22 | 82 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
r+R+++++eq+ +Le+ F++ +p ++e +++ + l + +++V++WFqNrR + ++
Pavir.6NG198000.1.p 22 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRRLLerfgAVRDANVFYWFQNRRSRSRR 82
89*****************99*************************************997 PP
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2 | Wus_type_Homeobox | 105 | 4.9e-34 | 21 | 83 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
ar+RW+P+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++
Pavir.6NG198000.1.p 21 ARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQNRRSRSRRR 83
789**********************************************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MDSHHSQAHH RSGEGGEPTT ARSRWAPKPE QILILESIFN SGMVNPAKDE TARIRRLLER 60 FGAVRDANVF YWFQNRRSRS RRRARQLQQG CSAAAQQHPS AAVVGAGHYH GASYNASPFS 120 MNGHNQVRAG MMMPTAAPLP SSVAAAAPHF FADEVDSGDD LFAISRQMGL MSRGGDHRCG 180 YTASDDSSQL SYQPTGTSSI QVFINGAVYE VPGAGAPLDL AGTFGRDVML VHSSGEILPV 240 NEQGVLMKSL QMGECYYLVS RST*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP005249 | 1e-102 | AP005249.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21. |
GenBank | AP014964 | 1e-102 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
GenBank | CP012616 | 1e-102 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |