PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG183000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 645aa    MW: 74342.5 Da    PI: 7.2054
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG183000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.65.7e-2585172190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn+YA+   Fs+r+s+s++ k++++i++rtf+Cs+ g r ++k++ e+++ +r+etr+ C+a++k++++ dg ++++++e eHnH la
  Pavir.6NG183000.1.p  85 DFYNSYARIKVFSIRRSSSHNVKNTTTIKNRTFCCSRAGIRGPDKRE-ESSKYSRPETRCMCQARMKISLK-DGFYYIYEFEPEHNHILA 172
                          6*******************************************999.999********************.***************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1985172IPR004330FAR1 DNA binding domain
PfamPF105512.0E-28262356IPR018289MULE transposase domain
PROSITE profilePS509669.693534581IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-5555578IPR007527Zinc finger, SWIM-type
SMARTSM005755.3E-5556583IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MASQPNLPTP HQTNNMDMPV PLLQQVQSII TPPDTDAATS SSDFFRINTQ SVDTERIELE  60
SVENSLEDNI PKIGMKFYSE QEAYDFYNSY ARIKVFSIRR SSSHNVKNTT TIKNRTFCCS  120
RAGIRGPDKR EESSKYSRPE TRCMCQARMK ISLKDGFYYI YEFEPEHNHI LATASQAHHL  180
ISQRTITEGQ LASVEAAKAV GISNKATFDL MAKEAGGIEN LGFTREDMKN KLYSKRTLKI  240
NQGDTEGTDS KMVADYEVYG DIVCFDTTYR KLNDGRPFGL LVGLNNHKKT IIFGAALLYD  300
ETVESFIWLF NTFLAAMSGK KPQTILTDED AAMAKAIKIV LPESHHRICV WHMNQNTCNH  360
LSGVVEENKK FNTDFQRCIY DQEEEEEEED FINAWNNLLE KYNLQENEWL ERLFNKNEKW  420
ALVYGRNTFS ADMVSTQRSE SMNNELKGYI SVKYDILTFF GHFDRLVANK RYEEVRCDFK  480
ATQSTPPLKS DMRILRHAAK IYTPVVFKVF QEQVMQTLNC DLFYCGDVDA EKVYKIKVCG  540
RKNEHIVKFS TLGGQVNCSC EKFEFVGILC CHALKILYIN NIKKIPEQYI LKRWTMDAKV  600
LHIKSNSETH EDPKTKLSQR RKELSRMFLK LAARATESDE TYLLA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.98951e-35callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG183000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683537.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1W0W5Z80.0A0A1W0W5Z8_SORBI; Uncharacterized protein (Fragment)
STRINGPavir.J04444.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-102FAR1-related sequence 5