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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG183000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 645aa MW: 74342.5 Da PI: 7.2054 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.6 | 5.7e-25 | 85 | 172 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA+ Fs+r+s+s++ k++++i++rtf+Cs+ g r ++k++ e+++ +r+etr+ C+a++k++++ dg ++++++e eHnH la Pavir.6NG183000.1.p 85 DFYNSYARIKVFSIRRSSSHNVKNTTTIKNRTFCCSRAGIRGPDKRE-ESSKYSRPETRCMCQARMKISLK-DGFYYIYEFEPEHNHILA 172 6*******************************************999.999********************.***************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-19 | 85 | 172 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.0E-28 | 262 | 356 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.693 | 534 | 581 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.1E-5 | 555 | 578 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.3E-5 | 556 | 583 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MASQPNLPTP HQTNNMDMPV PLLQQVQSII TPPDTDAATS SSDFFRINTQ SVDTERIELE 60 SVENSLEDNI PKIGMKFYSE QEAYDFYNSY ARIKVFSIRR SSSHNVKNTT TIKNRTFCCS 120 RAGIRGPDKR EESSKYSRPE TRCMCQARMK ISLKDGFYYI YEFEPEHNHI LATASQAHHL 180 ISQRTITEGQ LASVEAAKAV GISNKATFDL MAKEAGGIEN LGFTREDMKN KLYSKRTLKI 240 NQGDTEGTDS KMVADYEVYG DIVCFDTTYR KLNDGRPFGL LVGLNNHKKT IIFGAALLYD 300 ETVESFIWLF NTFLAAMSGK KPQTILTDED AAMAKAIKIV LPESHHRICV WHMNQNTCNH 360 LSGVVEENKK FNTDFQRCIY DQEEEEEEED FINAWNNLLE KYNLQENEWL ERLFNKNEKW 420 ALVYGRNTFS ADMVSTQRSE SMNNELKGYI SVKYDILTFF GHFDRLVANK RYEEVRCDFK 480 ATQSTPPLKS DMRILRHAAK IYTPVVFKVF QEQVMQTLNC DLFYCGDVDA EKVYKIKVCG 540 RKNEHIVKFS TLGGQVNCSC EKFEFVGILC CHALKILYIN NIKKIPEQYI LKRWTMDAKV 600 LHIKSNSETH EDPKTKLSQR RKELSRMFLK LAARATESDE TYLLA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.9895 | 1e-35 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG183000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683537.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1W0W5Z8 | 0.0 | A0A1W0W5Z8_SORBI; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.J04444.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-102 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG183000.1.p |