PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6NG144900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 675aa    MW: 79285.4 Da    PI: 8.6212
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6NG144900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.63.9e-0864112247
                 FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk 47 
                          f+++Y+  +GF+v++++  ++   krn+ei+k++++C ++gk++e+k++
  Pavir.6NG144900.1.p  64 FFSFYGFLAGFKVVVTHVARTtskKRNNEIYKQEMKCHRYGKQSEKKET 112
                          9**************99988878899******************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-664112IPR004330FAR1 DNA binding domain
PfamPF105519.1E-35250343IPR018289MULE transposase domain
PROSITE profilePS509669.804494532IPR007527Zinc finger, SWIM-type
SMARTSM005753.8E-4507534IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MNSADQEENE EQTNESQELT EEEVEAFIRY EIEEASAGNN ADVDSKYTPQ IGMEFTDRDS  60
AHHFFSFYGF LAGFKVVVTH VARTTSKKRN NEIYKQEMKC HRYGKQSEKK ETGIWKVVRL  120
DLEHNHELSP QDRNQLFSGK KYMTDMEKGI IRTLNDNNIP TRKMIAILSY LRGGLTALPY  180
KTKDVQNLRT KINREVTGND MTQAIEYFRK RKAVDPTFSY RFQVDNDMKV KNIFWREGIS  240
LKWYAEYGEC VSFDTTYMTN RYNLPFAPFV GITGHAHTCL FGCAFLSDET TDTFKWVFET  300
FIESMEGKHP KTIITDQDKA MKSVIEQVLP NTRHKNCFFH IKSKCYKKNL KCFAANKGLP  360
EIFEDTINFS VTVQEFEYLW QKMIFDYKLE NNKYFNKMWN MRERFIPVYF KNEFFPFIQS  420
TGRSEGTNAR FKDNFGYTIE QQAIDLYNRN IYLKFMNQLR QTEKFKYKET EKEKISEVWY  480
KTNQIKKHER IRKYIVMTDL TEGNEDFSCI CGKFNKDGIL CVHILKIIVE EEIIKIPEKY  540
FIDREETSNT HELLRFNMLS RKEAILTSKG AKREIATNYL AQEFERVEKE LDLLLAESET  600
LPTSAVTEGE QSTGCTTSST MPKEIVVLQD PKRIQQKGRL KNPTRLMPMV EQMRAKMAKT  660
EAKKKTKNPN NSSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6NG144900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311831.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5S6T50.0A0A1Z5S6T5_SORBI; Uncharacterized protein
STRINGPavir.J06646.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-61FAR1-related sequence 5