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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG141200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 112aa MW: 11474.1 Da PI: 8.3685 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 96.2 | 2.5e-30 | 29 | 82 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +vrY eC++NhAas+GghavDGC+Ef+++ geegtaaal+CaACgCHR+FHRr v Pavir.6NG141200.1.p 29 GVRYGECRRNHAASMGGHAVDGCREFLAE-GEEGTAAALRCAACGCHRSFHRRVV 82 68**************************8.999********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 25 | No hit | No description |
Pfam | PF04770 | 1.7E-29 | 30 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.5E-25 | 31 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.575 | 32 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-8 | 38 | 82 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MMKRMVILRR CHPPPPPAAA LLGGCGGGGV RYGECRRNHA ASMGGHAVDG CREFLAEGEE 60 GTAAALRCAA CGCHRSFHRR VVRRCCCDDD AASAAGAGCS PESSASSTTP R* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG141200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065618 | 4e-86 | BT065618.1 Zea mays full-length cDNA clone ZM_BFb0349A13 mRNA, complete cds. | |||
GenBank | EU971969 | 4e-86 | EU971969.1 Zea mays clone 372958 mini zinc finger 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151712.2 | 6e-50 | mini zinc finger 3 | ||||
Swissprot | Q0J5F8 | 5e-35 | MIF4_ORYSJ; Mini zinc finger protein 4 | ||||
TrEMBL | A0A3L6RK52 | 2e-52 | A0A3L6RK52_PANMI; Mini zinc finger 3 | ||||
STRING | Pavir.Fb01647.1.p | 3e-72 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74660.1 | 4e-12 | mini zinc finger 1 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG141200.1.p |
Publications ? help Back to Top | |||
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