PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB

Protein Properties

Length: 298aa MW: 31687.8 Da PI: 8.7272

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG141000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv +v+++G+g+W++++ g+ R+ k+c++rw +yl Pavir.6NG141000.1.p 14 KGPWTPEEDLVLVSYVQEHGPGNWRAVPTNTGLMRCNKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	49	1.4e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++l++++ ++lG++ W++Ia++++ Rt++++k++w+++l Pavir.6NG141000.1.p 67 RGNFSVQEEKLIIHLQALLGNR-WAAIASYLP-DRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.516	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.12E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	7.4E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	8.06E-11	16	61	No hit	No description
PROSITE profile	PS51294	24.509	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	4.97E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGRPPCCEKT GVKKGPWTPE EDLVLVSYVQ EHGPGNWRAV PTNTGLMRCN KSCRLRWTNY 60 LRPGIKRGNF SVQEEKLIIH LQALLGNRWA AIASYLPDRT DNDIKNYWNT HLKKKLGTMG 120 AGGAEAARTG RSAAPKGQWE RRLQTDIHTA RQALREALSL DPALPLPLPP AKTEPQQMLM 180 QLPQPAPAPP SQAAYASSAE NIARLLEGWM RPGTGSAGKT SSGSRSSASA VSGGEGASAS 240 HSGTTPTPEG STGTSKAEDA GPVPAFSMLE SWLLDDGMGH GDAGLIGVPL ADPCEFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-25	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	4e-25	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	4e-25	14	116	4	105	C-Myb DNA-Binding Domain
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269\|PubMed:1840903}.
Uniprot	TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269\|PubMed:1840903}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG141000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT035749	1e-132	BT035749.2 Zea mays full-length cDNA clone ZM_BFb0081I17 mRNA, complete cds.
GenBank	KJ727881	1e-132	KJ727881.1 Zea mays clone pUT5974 MYB transcription factor (MYB83) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821217.1	1e-161	myb-related protein 306-like isoform X1
Swissprot	P81392	1e-101	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A3L6PM73	1e-175	A0A3L6PM73_PANMI; Uncharacterized protein
STRING	Pavir.Fa00895.1.p	1e-174	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	7e-84	myb domain protein 96

Link Out ? help Back to Top
Phytozome	Pavir.6NG141000.1.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]