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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pavir.6NG110800.5.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
G2-like |
| Protein Properties |
Length: 321aa MW: 33689 Da PI: 11.158 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.6NG110800.5.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 92.2 | 4.4e-29 | 254 | 304 | 2 | 52 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52
pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+
Pavir.6NG110800.5.p 254 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQR 304
9*************************************************6 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MEARAASAPD LSLHISLPSS AASPPPAPGR LGAAVGGRGA QPAAGGDPWR RLNGSTASTE 60
LSLSPPPRQE PAGDVLPWRL RPPAANYSSS SSPSSAATAE AASFVPVTVP RLSLDAAAEA 120
ARARPINGVP VYSSPRAAGH PFLGAAGDYR QGHPKVGLYN PYHASSWPSS LRSTTTPPAV 180
APSASDPAAA FLSPSAYHRM LSGTGRLHLH GVLADTFRGY GGHHHRQQQQ HFGSLASARY 240
MPKFPASRRG MRAPRMRWTS SLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS 300
HLQRSMATTS CMQCGHPSFS *
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4k_A | 1e-14 | 255 | 304 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 1e-14 | 255 | 304 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 1e-14 | 255 | 304 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 1e-14 | 255 | 304 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 1e-14 | 255 | 304 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 1e-14 | 255 | 304 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 1e-14 | 255 | 304 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 1e-14 | 255 | 304 | 4 | 53 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU935003 | 1e-157 | EU935003.1 Zea mays cultivar B73 kanadi1 (kan1) mRNA, complete cds. |
| GenBank | JX469982 | 1e-157 | JX469982.1 Zea mays subsp. mays clone UT3342 G2-like transcription factor mRNA, partial cds. |
