PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pavir.6NG084200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 407aa MW: 41883.2 Da PI: 7.8078

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG084200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.4e-05	299	336	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYI+ L Pavir.6NG084200.1.p 299 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIRFL 336 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.903	287	336	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-9	297	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.35E-5	297	340	No hit	No description
SuperFamily	SSF47459	1.1E-11	297	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0097	298	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MADHQEMIHP AAAAAAGGAS HGHGGGDWWS TAVSCSPDQL PGFGAGLSPA AAADGSNRSR 60 SGNTASSESP GSHSLATGGS SITFQDPAGG VADPSAVVPQ TATGLAGGWN QPYYLDGSGF 120 HGYMSSSRGD QVQLGLRSPS SSNNSLMLQD PHDPNHQFLS NLGLELLSSP TPTSPSGGFR 180 SSSLLRSLTE PAAAAKPSPG FQQYQQQTMN QAPSSIREAL QFTNSTPFWN PSAGFAAEGT 240 ASGPPSGQSR PASLAAKSTL EGAGDSSSII TKKANTDPTP LKKARTGTPS SPLPTFKVRK 300 EKLGDRITAL QQLVSPFGKT DTASVLHETI EYIRFLHQQV GSLSAPYLKN RQQVPHLKVS 360 RDGGEAAAAK GDLTGRGLCL VPISSTFAVA SETPVDFWSP FGAAFR*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MADHQEMIHP AAAAAAGGAS HGHGGGDWWS TAVSCSPDQL PGFGAGLSPA AAADGSNRSR  60
SGNTASSESP GSHSLATGGS SITFQDPAGG VADPSAVVPQ TATGLAGGWN QPYYLDGSGF  120
HGYMSSSRGD QVQLGLRSPS SSNNSLMLQD PHDPNHQFLS NLGLELLSSP TPTSPSGGFR  180
SSSLLRSLTE PAAAAKPSPG FQQYQQQTMN QAPSSIREAL QFTNSTPFWN PSAGFAAEGT  240
ASGPPSGQSR PASLAAKSTL EGAGDSSSII TKKANTDPTP LKKARTGTPS SPLPTFKVRK  300
EKLGDRITAL QQLVSPFGKT DTASVLHETI EYIRFLHQQV GSLSAPYLKN RQQVPHLKVS  360
RDGGEAAAAK GDLTGRGLCL VPISSTFAVA SETPVDFWSP FGAAFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG084200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821266.1	0.0	transcription factor bHLH112-like isoform X1
TrEMBL	A0A3L6PM30	0.0	A0A3L6PM30_PANMI; Uncharacterized protein
STRING	Pavir.Fb00501.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	2e-43	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.6NG084200.1.p