PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 845aa MW: 95970 Da PI: 7.2384

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6NG069000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.2	2.2e-26	85	174	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGFs+r+++s+ksk +++i++ +fvCs+eg+++e+++ +k+r++ a+ r gC+a+l+v ++ ++kw+vtkl++eHnHe+ Pavir.6NG069000.1.p 85 FYIAYAGRVGFSIRIARSRKSKCSESIIMLRFVCSREGFSKEKRSVaaGTKTRKRPASIREGCNAMLEVLRRGNSKWVVTKLVKEHNHEV 174 9*************************************99887776788899999*****************************95 PP
2	FAR1	59.1	1.4e-18	208	298	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA+++GF+ r+++s+ks ++++ ++ ++vCs++ +++ ++++ ++k+ r +r gC+a +++ ++ +++w v+kl leH+Hel Pavir.6NG069000.1.p 208 FYYSYASRTGFEARVRQSRKS-QDESLKMLKLVCSRHRYHSGRENNgeDTKRVRALDPSRDGCDALFEIIRKGKDVWTVSKLILEHTHEL 296 9*****************9.6777*********99999995555666677789****************************9 PP FAR1 90 ap 91 +p Pavir.6NG069000.1.p 297 NP 298 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-24	85	174	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.0E-16	208	298	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-19	399	490	IPR018289	MULE transposase domain
Pfam	PF04434	2.7E-4	678	710	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.361	678	714	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.0E-4	689	716	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence Send to blast
MMEPQAVDLE DDSINFWASL GVNPHVDQMP LHNVHIVDHQ AQPPPAAAAA QPQSVCRDLF 60 PVEADACLEP RLGMEFESGE AAKTFYIAYA GRVGFSIRIA RSRKSKCSES IIMLRFVCSR 120 EGFSKEKRSV AAGTKTRKRP ASIREGCNAM LEVLRRGNSK WVVTKLVKEH NHEVGLPSRV 180 HYIAIENDAV VDPYLGMEFE SLESAKTFYY SYASRTGFEA RVRQSRKSQD ESLKMLKLVC 240 SRHRYHSGRE NNGEDTKRVR ALDPSRDGCD ALFEIIRKGK DVWTVSKLIL EHTHELNPAP 300 ASRVHCVRSQ GEVLVIANNF ADTRNLLLNG QDSQHPREMR YNDLGPEDAQ SLFEYLKKRQ 360 DEDPSFFYAV QHGKNGQSAN IFWADAKARM AYYHFGDAVR FETAYRKNKE TIPIVIFLGV 420 NHHVQPVVFG CALLIDESEA SFTWLFEKWL EAMHMGPPIS LVTEFNRVMA TAIAKVLPDT 480 YHIFCEKHIL DTVKEGLHGM FPDLEPFIND LRKCIDGSRI EELFESGWNS VIIKHGLGNN 540 ELLQSLYDIR QQWAPAYTKK VFYPGNQMPT TCENIEKVVE KYFSSKTELR VAVWQLGEVI 600 SSSFDAEVQA DYFTMFQMPP LSTASPVEKQ GSSIFTSTIF GLFQGQFAES FGYYAERLED 660 ETVHKYRVTR YEGDEETYTV SFNPDQSTVN CSCCLFESCG MLCRHALRIF IIEGVRALPK 720 AYILKRWTKH AKNIITSENY TDLRGDHEDP STVRYNDLCC DAVKCAKEGS KSSEIYAIAK 780 DALHKALDEV IRSSKNFRGQ QNLRSCTMSI KRPIKKFDRA KDSSCKSLKR STSKSPFMES 840 DDIG*

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence Send to blast

MMEPQAVDLE DDSINFWASL GVNPHVDQMP LHNVHIVDHQ AQPPPAAAAA QPQSVCRDLF  60
PVEADACLEP RLGMEFESGE AAKTFYIAYA GRVGFSIRIA RSRKSKCSES IIMLRFVCSR  120
EGFSKEKRSV AAGTKTRKRP ASIREGCNAM LEVLRRGNSK WVVTKLVKEH NHEVGLPSRV  180
HYIAIENDAV VDPYLGMEFE SLESAKTFYY SYASRTGFEA RVRQSRKSQD ESLKMLKLVC  240
SRHRYHSGRE NNGEDTKRVR ALDPSRDGCD ALFEIIRKGK DVWTVSKLIL EHTHELNPAP  300
ASRVHCVRSQ GEVLVIANNF ADTRNLLLNG QDSQHPREMR YNDLGPEDAQ SLFEYLKKRQ  360
DEDPSFFYAV QHGKNGQSAN IFWADAKARM AYYHFGDAVR FETAYRKNKE TIPIVIFLGV  420
NHHVQPVVFG CALLIDESEA SFTWLFEKWL EAMHMGPPIS LVTEFNRVMA TAIAKVLPDT  480
YHIFCEKHIL DTVKEGLHGM FPDLEPFIND LRKCIDGSRI EELFESGWNS VIIKHGLGNN  540
ELLQSLYDIR QQWAPAYTKK VFYPGNQMPT TCENIEKVVE KYFSSKTELR VAVWQLGEVI  600
SSSFDAEVQA DYFTMFQMPP LSTASPVEKQ GSSIFTSTIF GLFQGQFAES FGYYAERLED  660
ETVHKYRVTR YEGDEETYTV SFNPDQSTVN CSCCLFESCG MLCRHALRIF IIEGVRALPK  720
AYILKRWTKH AKNIITSENY TDLRGDHEDP STVRYNDLCC DAVKCAKEGS KSSEIYAIAK  780
DALHKALDEV IRSSKNFRGQ QNLRSCTMSI KRPIKKFDRA KDSSCKSLKR STSKSPFMES  840
DDIG*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.33098	0.0	callus\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6NG069000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820561.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2T7D3X2	0.0	A0A2T7D3X2_9POAL; Uncharacterized protein
STRING	Pavir.Fb00442.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-120	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	Pavir.6NG069000.1.p