 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pavir.6NG051800.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
TCP |
| Protein Properties |
Length: 405aa MW: 42015.6 Da PI: 8.9038 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pavir.6NG051800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 116.8 | 2.8e-36 | 85 | 196 | 14 | 116 |
TCP 14 kvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskksq 101
+v+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ a+s +s as++ss+++a++a + +++
Pavir.6NG051800.1.p 85 AVEGRGRRIRMPAMCAARLFQLTRELGHKTDGETIEWLLQQAEPAIIAATGTGTIPANFSsLAVSLRSGASHPSSASRAAAAFhHLPPPH 174
79*******************************************************999999999999999999955444444788888 PP
TCP 102 ksaasalnlak.esr......a 116
++ a++l ++ +++
Pavir.6NG051800.1.p 175 HEVAAMLGWNHgHHHqqqflpP 196
8888888888843333333330 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MEAPSSSTST CTNSSRSASE KQHQCRQHHA VGQPHHPFYY AAAPGGGAAA TAIVQAPSAG 60
AGAGEVQLAQ AAPASGSSGG PEKKAVEGRG RRIRMPAMCA ARLFQLTREL GHKTDGETIE 120
WLLQQAEPAI IAATGTGTIP ANFSSLAVSL RSGASHPSSA SRAAAAFHHL PPPHHEVAAM 180
LGWNHGHHHQ QQFLPPSQQM QQHQAPRDPG AGEFMRKRYR DGADDLFKDA APRQNPTMAA 240
AGRARTVAMW AVAPPNSSAG GALCVQPARA FCAGAGAGTG TSKVQAPLQF MSTRSNNNNN 300
IPGGATMDAN IGMLAALNAG FQHQQQQEQE GQPPEMAGIY DRQRTTEEAG CRATGGEGWR 360
ECEGEGKGGS AAGWSAAEKA ASQAGKASAG RAGIWQASEH WAKR*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT063432 | 1e-118 | BT063432.1 Zea mays full-length cDNA clone ZM_BFc0063A06 mRNA, complete cds. |
| GenBank | KJ726897 | 1e-118 | KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds. |
