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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6NG030900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 795aa MW: 85342.2 Da PI: 5.9281 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 120 | 175 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F++ ++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Pavir.6NG030900.1.p 120 KKRYHRHTQHQIQELEAFFKEFPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 175 688999***********************************************999 PP | |||||||
2 | START | 206.4 | 1.1e-64 | 309 | 533 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.. 77 ela +a++elv++a+++ep+Wv e +n++e+ + f+++ + ++ea+r+++vv+m++++lve l+d++ qW++ + Pavir.6NG030900.1.p 309 ELAVAAMEELVRMAQLGEPLWVPALvdgaapETLNEEEYARGFPRGVGpkspeLRSEASRETVVVIMNHVNLVEMLMDVN-QWSTLFSsi 397 57899*****************99999****************99777********************************.******999 PP ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS START 78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158 +a+tlev+s+g galqlm+ae+q++splvp R++ fvRy++q+++g+w++vdvS+d + + ++R++++pSg+li++++ Pavir.6NG030900.1.p 398 vsRAATLEVLSTGvagnynGALQLMTAEFQMPSPLVPtRESQFVRYCKQHPDGGWAVVDVSLDGLRAG--GAAGARGQRRPSGCLIQEMP 485 99*****************************************************************8..58****************** PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ng+s+vtwveh++ +++++h+l+r+lv+sgla+ga++w a+l+rqce+ Pavir.6NG030900.1.p 486 NGYSRVTWVEHAEADDAMVHELYRPLVSSGLAFGARRWAAALERQCER 533 **********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 103 | 161 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.59E-19 | 105 | 178 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.248 | 117 | 177 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-19 | 118 | 181 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.94E-19 | 119 | 178 | No hit | No description |
Pfam | PF00046 | 4.3E-17 | 120 | 175 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 152 | 175 | IPR017970 | Homeobox, conserved site |
Gene3D | G3DSA:1.10.10.60 | 1.9E-4 | 162 | 204 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50848 | 42.736 | 300 | 536 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.04E-32 | 303 | 535 | No hit | No description |
CDD | cd08875 | 1.49E-116 | 304 | 532 | No hit | No description |
SMART | SM00234 | 1.9E-63 | 309 | 533 | IPR002913 | START domain |
Pfam | PF01852 | 2.0E-53 | 310 | 533 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.3E-5 | 380 | 526 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.16E-24 | 558 | 782 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 795 aa Download sequence Send to blast |
MVGGEYSELY MPGGMMIPAG RNMPAAGRIG GLASYAASLG QNMMDGQHQL AVMQQHQQQH 60 QNHGQQQQAA TTGSDAHDPH HNELLMESKS GSDNMEGGIG SGSGGEELQE EDLSLQRPRK 120 KRYHRHTQHQ IQELEAFFKE FPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKTQQER 180 QENTQLRAEN EKLRAENARY KDALTNAACP NCGGPATAVI GEMSFDEHHL RIENMRLRDE 240 IDRISAIAAK YVGKPAASML PNSSNISSVA AQYPPPLSTH HLITGAGDMF GSLHHHGAAA 300 GFDKPLVIEL AVAAMEELVR MAQLGEPLWV PALVDGAAPE TLNEEEYARG FPRGVGPKSP 360 ELRSEASRET VVVIMNHVNL VEMLMDVNQW STLFSSIVSR AATLEVLSTG VAGNYNGALQ 420 LMTAEFQMPS PLVPTRESQF VRYCKQHPDG GWAVVDVSLD GLRAGGAAGA RGQRRPSGCL 480 IQEMPNGYSR VTWVEHAEAD DAMVHELYRP LVSSGLAFGA RRWAAALERQ CERLASAMAS 540 GVPAVPAAGD AGVVTSAEGR RSMLRLAERM VASFCGGVTA STTHQWTTLS GSGPEDVRVM 600 TRKSVDDPGR PPGIILNAAT SFWLPVPPAR VFSFLRDDAT RSEWDILSNG GDVQEMAHIA 660 NGRDQGNAVS LLRVNNANSN QSNMLILQEC CTDATGSYVI YAPVDVVAMN VVLNGGDPDY 720 VALLPSGFAI LPDGPGAGAT GGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIACTVER 780 IKAALAADTA GGGR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.17370 | 0.0 | stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6NG030900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819913.1 | 0.0 | homeobox-leucine zipper protein ROC7-like | ||||
Swissprot | A3BPF2 | 0.0 | ROC7_ORYSJ; Homeobox-leucine zipper protein ROC7 | ||||
TrEMBL | A0A2T7D345 | 0.0 | A0A2T7D345_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb00210.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP799 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6NG030900.1.p |