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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG414400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 139aa MW: 15304.6 Da PI: 8.8322 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63 | 6.3e-20 | 19 | 71 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr+++ +g+++AeIrd ++ r++lg+f+taeeAa+a+++ + +++g+ Pavir.6KG414400.1.p 19 TKYRGVRRRP-SGKFAAEIRDS---SrQSVRVWLGTFDTAEEAARAYDRKAYAMRGH 71 69********.7*********3...2236**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.4E-15 | 19 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.80E-26 | 19 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 20 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-31 | 20 | 84 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.352 | 20 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-22 | 20 | 79 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.8E-10 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MEGGGGWDDY QGKDGGEPTK YRGVRRRPSG KFAAEIRDSS RQSVRVWLGT FDTAEEAARA 60 YDRKAYAMRG HLAVLNFPAE ARNYARGGSS SSSRQQQQQQ QQQQQEGGTG GGRQVIELEY 120 LDDQVLQEML KGSDGKNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-31 | 15 | 125 | 9 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG414400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822510.1 | 6e-68 | ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 2e-34 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2T7DAY5 | 7e-76 | A0A2T7DAY5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb02184.1.p | 8e-67 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23230.1 | 1e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG414400.1.p |
Publications ? help Back to Top | |||
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