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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.6KG401200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 257aa MW: 28457.7 Da PI: 8.5594 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6KG401200.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++lv +++ +G g+W++ ++ g+ R++k+c++rw +yl
Pavir.6KG401200.1.p 14 KGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
79******************************99************97 PP
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2 | Myb_DNA-binding | 57.6 | 2.9e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T++Ed+l+v+++ +lG++ W++Ia++++ gRt++++k++w+++
Pavir.6KG401200.1.p 67 RGNFTADEDDLIVKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MGRSPCCEKA HTNKGAWTKE EDDRLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TADEDDLIVK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLLSRG 120 IDPVTHRPIA DAARNVTISF QPDAPSQQQL SDEAEAPPPP PPQQQQQLKP PPRCPDLNLD 180 LCISPPCHKE EEDQELVKPA AVKREMLQAG HGTLGLCFGC SLGLQKGAAG CTCSSNSHFL 240 GLRVGMLLDF RGLEMK*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JF299188 | 0.0 | JF299188.1 Panicum virgatum R2R3-MYB transcriptional factor PvMYB4d mRNA, complete cds. |