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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.6KG394700.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bZIP |
Protein Properties |
Length: 466aa MW: 49853.7 Da PI: 6.971 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6KG394700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 33.5 | 9e-11 | 326 | 384 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
kr +r NR +A rs +RK +i+eLe kv++L++e ++L +l +l+ +a l +++
Pavir.6KG394700.1.p 326 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSAGLATQN 384
899*********************************************99998887766 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0005829 | Cellular Component | cytosol |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 466 aa
Download sequence Send
to blast |
MDDPGATDPA AARHHLSPQL GGQPPVPRSP TPLDLAAAAA SGYRRLSPSL RPPAHPQARL 60 PSPYGQIPAP GGGGHHARSL SQPLFFSLDS LPPPPYADLG AAPHAVPPSP PSSSSDPQQQ 120 PPPPPPLGLP PRKGAHRRSH SDIPFGGFAQ LSPPLPPPAP VKREVTVAAE GCRSDGGDDA 180 ALYDLVNSYM DLDGLDPLNS SEDRHDDRDS HASGTRAGSA ADSSENEAES QSTSVDRKDG 240 GKSRHCRSLS MDSFMGKLNF AAGDESPKLP LPSPGGGLTR SGSGSLEGGA VALFDMEFAN 300 GEFTESEKKK IMANERLAEI ALTDPKRVKR ILANRQSAAR SKERKMRYIQ ELEHKVQVLQ 360 TEATTLSAQL TMLQRDSAGL ATQNNELKIR LQAMEQQAQL RDALNEALTA EVQRLKLATG 420 EITDGRMAKS LQQQMNSQML QLQQLQIQQQ QQGQQQQQQQ PQKLA*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT069623 | 0.0 | BT069623.1 Zea mays full-length cDNA clone ZM_BFb0192H19 mRNA, complete cds. |
GenBank | KJ727739 | 0.0 | KJ727739.1 Zea mays clone pUT5680 bZIP transcription factor (bZIP43) mRNA, partial cds. |