PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG393900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 265aa    MW: 28582.2 Da    PI: 5.391
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG393900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11105150454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          +h e+Er+ Rd++N +f eLr  +P+       +++Ka+ L  A  YI +L
  Pavir.6KG393900.1.p 105 THVEAERQLRDKLNRRFCELRAAVPTV-----SRMDKASLLADAATYIAEL 150
                          799***********************6.....49**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-1499164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.278101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.17E-11104155No hitNo description
Gene3DG3DSA:4.10.280.108.1E-14105163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-9105150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MQQHSDNSAM DELVRPAFSG SSPSPDTFFS TTGQHQELEF MPCDFPEVWL EDDDWIDGPP  60
DGISCGDEGS RSPGNDLLSG EPPAPAPKRR RGRKPGPRSN GPALTHVEAE RQLRDKLNRR  120
FCELRAAVPT VSRMDKASLL ADAATYIAEL RGRVKQLESE NRLAAAAAAA APVADTYSVG  180
VQENLEVRMV GTEAAALRLT TAARHAPARF MLALQWLDLP VQHACVCLVG GMTVQDAVVD  240
VPAAALRDER ALRAALLHRL QQTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-17104160763Transcription factor MYC2
5gnj_B1e-17104160763Transcription factor MYC2
5gnj_E1e-17104160763Transcription factor MYC2
5gnj_F1e-17104160763Transcription factor MYC2
5gnj_G1e-17104160763Transcription factor MYC2
5gnj_I1e-17104160763Transcription factor MYC2
5gnj_M1e-17104160763Transcription factor MYC2
5gnj_N1e-17104160763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG393900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406797e-90BT040679.1 Zea mays full-length cDNA clone ZM_BFc0116D15 mRNA, complete cds.
GenBankKJ7267877e-90KJ726787.1 Zea mays clone pUT2108 bHLH transcription factor (bHLH145) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822542.11e-123transcription factor MYC3-like
TrEMBLA0A3L6RG361e-122A0A3L6RG36_PANMI; Transcription factor MYC2-like
STRINGPavir.Fa00117.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.11e-20bHLH family protein