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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pavir.6KG393800.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 284aa MW: 30213.9 Da PI: 6.5164 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pavir.6KG393800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 29.6 | 1.2e-09 | 105 | 150 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er RRd++ +f Lr +P+ ++++K + L A+ YI +L
Pavir.6KG393800.1.p 105 SHMEAERHRRDKLHRRFCDLRAAVPNV-----TRMDKTSLLADATAYIAEL 150
899***********************8.....7***************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MDEHGRPTSS TSSPPSPASF FSAASNGGVL EFPYTEVPEQ WLMDDDDSNV QEQRLLEHGA 60 VWGDDGALLS ARSADLSSRN PPAAAATKRG RKPPGPRAGG GPAVSHMEAE RHRRDKLHRR 120 FCDLRAAVPN VTRMDKTSLL ADATAYIAEL RARVEQLEAE ARRAAAARKA NRPFFVADAA 180 AAAAAAAAPA GSFDFELGEE EKLEVRMVVG REAAATLRLT TAARHGPARL MDALRSLDLP 240 VLHACACRVG GVTVQDAVVD VPAELRDADC LRAALLHRLQ ESG*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 8e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_B | 8e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_E | 8e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_F | 8e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_G | 8e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_I | 8e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_M | 8e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
5gnj_N | 8e-15 | 104 | 160 | 7 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KJ728281 | 3e-46 | KJ728281.1 Zea mays clone pUT6560 bHLH transcription factor (bHLH8) gene, partial cds. |