PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG367600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family EIL
Protein Properties Length: 641aa    MW: 70323.9 Da    PI: 6.8394
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG367600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3412.74.3e-126383831336
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasds 90 
                          eel +rmwkd+++lkr+ker+++l   + ++  ++k++k+++qa rkkm+raQ giLkYMlk mevcna+GfvYgiip+kgkpv gas++
  Pavir.6KG367600.1.p  38 EELARRMWKDKIKLKRIKERQQKLA-LQLSEPVKSKTKKISDQALRKKMARAQNGILKYMLKLMEVCNARGFVYGIIPDKGKPVGGASEN 126
                          8********************9965.55555777889***************************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HH CS
                 EIN3  91 LraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelw 180
                          +raWWkekv+fd+ngpaai+ky+ +n +ls+++s+   +++++hsl++lqD+tlgSLLsalmqhc+p+qrr+pl+kgv+pPWWP+G+e+w
  Pavir.6KG367600.1.p 127 IRAWWKEKVKFDKNGPAAIAKYDLENSMLSNAKSS---GTKNQHSLMDLQDATLGSLLSALMQHCSPQQRRYPLDKGVPPPWWPSGNEAW 213
                          ******************************99999...88************************************************** PP

                          HHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX.XX...X CS
                 EIN3 181 wgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah.ss...s 266
                          w +lgl+k  g ppykkphdlkkawk +vL  vikhm+p++++ir+++r+sk+lqdkm+akes ++l vl++eek ++++    s+   +
  Pavir.6KG367600.1.p 214 WTALGLPKGEG-PPYKKPHDLKKAWKAGVLMGVIKHMAPNFDKIRDHVRKSKCLQDKMTAKESLIWLGVLQREEKSIHSFGRAaSRithQ 302
                          ***********.9****************************************************************9998775446556 PP

                          XXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXX......XXXXXXX CS
                 EIN3 267 lrkqspkvtlsceqkedvegkkeskikhvqavktta............gfpvvrkrkkkpsesakvsskevsrtcqssqfrg 336
                          +++++++ t+s+++++dv++ +++  ++++++++ +            ++ v ++r++ + +++ vs++e+ +  q+++ ++
  Pavir.6KG367600.1.p 303 STSGDKNDTYSSSDEYDVDQLEQPARSTSSKEDEGDtqlvlqirgrqiSTRVKKRRRRDKPSNQVVSKEEM-TKSQQKKSPS 383
                          666999*************7777777777777666678999999998766666666665666666666654.4555555443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048736.3E-12238286No hitNo description
Gene3DG3DSA:1.10.3180.102.1E-67160291IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167683.27E-59166288IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MDHLGILASE LGDASDFDVD GINSLSENDV SDEEIDAEEL ARRMWKDKIK LKRIKERQQK  60
LALQLSEPVK SKTKKISDQA LRKKMARAQN GILKYMLKLM EVCNARGFVY GIIPDKGKPV  120
GGASENIRAW WKEKVKFDKN GPAAIAKYDL ENSMLSNAKS SGTKNQHSLM DLQDATLGSL  180
LSALMQHCSP QQRRYPLDKG VPPPWWPSGN EAWWTALGLP KGEGPPYKKP HDLKKAWKAG  240
VLMGVIKHMA PNFDKIRDHV RKSKCLQDKM TAKESLIWLG VLQREEKSIH SFGRAASRIT  300
HQSTSGDKND TYSSSDEYDV DQLEQPARST SSKEDEGDTQ LVLQIRGRQI STRVKKRRRR  360
DKPSNQVVSK EEMTKSQQKK SPSDHPPSAE DEVEVTQRND NPPETVSTPI SDMNIFYPMD  420
VVGMTNQPTS LNHVPTTGSL QRHVDSQGNF LSPGAAINNS NINQDASAAL NKSSNQAASA  480
VLNNYSSNQA ARAAQSSTYL SDPPLACEGS DDIVNSWSGH SFRQDIGCGP IGFNPSPVVQ  540
PSTMQQPLPL PMDHHAPIVG TGALSEDGSY SYPTAGSGHL GTVASEAHQL MDGSFFGEAA  600
DKFAGNSFGE LPLSLIPIDS PISYLDVFLN DDDLMPYLGT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A5e-601662939136ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1354359KKRRRR
2356361RRRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.8990.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG367600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973869.10.0ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A3L6Q4C50.0A0A3L6Q4C5_PANMI; ETHYLENE INSENSITIVE 3-like 3 protein
STRINGPavir.Fa00424.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37203779
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-135ETHYLENE-INSENSITIVE3-like 3