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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.6KG361900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | SBP | ||||||||
Protein Properties | Length: 1112aa MW: 121584 Da PI: 7.1594 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.5 | 2.5e-40 | 181 | 258 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+adls+ak+yhrrhkvCe+hsk++++lv+ ++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+q+ Pavir.6KG361900.1.p 181 MCQVDDCRADLSSAKDYHRRHKVCEAHSKTTKALVASQMQRFCQQCSRFHPLAEFDEGKRSCRRRLAGHNRRRRKTQP 258 6**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-33 | 175 | 243 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.898 | 179 | 256 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.66E-37 | 180 | 259 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-29 | 182 | 255 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1112 aa Download sequence Send to blast |
MQREVGPQVA PPLFMHQIQP LPPHAAAAKK RAHPWPAAVA PARAAAAAGD GNWNPKMWDW 60 DSRALTARPS SDALRLGGGG AQGQQQQQQP QPASAAAKAA EAHRQGNGAL NLQLGLRKDA 120 ATPMDASPPA PMASSPSPPA SAAAGQEPVV RPSKRVRSGS PGSAGGSGGG GGANGAASYP 180 MCQVDDCRAD LSSAKDYHRR HKVCEAHSKT TKALVASQMQ RFCQQCSRFH PLAEFDEGKR 240 SCRRRLAGHN RRRRKTQPTD VASQLLLPGN QENAANRTQD IVNLITVIAR LQGSNAGKAP 300 SIAPIPDKQN LVEIISKINS LNNTTSVAKS PPLETVDLNA SQEQQEDSVQ KTANGIDKQT 360 VPSTMDLLAV LSTGLATSTP ETNTSQSQGS SDSSGNNKSK SHSTEPATVV NSHDKSIRAF 420 PAAGFTRSNS THESQPHTYM QTDQEPRPYL SLQLFGGTEE DIPPKMDCAN KYLSSESSNP 480 LDERSPSSSP PITHKFFPIH SVDEEDRHPH DYGEDVAMVE VSTSRAWCAP PLELFKDPDR 540 PIENGSPPNP GYQSCYASTS CSDHSPSTSN SDGQDRTGRI IFKLFGKEPS TIPGNLRDEI 600 VNWLKHSPTE MEGYIRPGCL VLSMYLSMPA IAWEELEENL LQRVNALVQN PHLDFWREGR 660 FLVRTDSKLV SYNEGTTRLS KSWRTWNTPE LTFVSPIAVV GGQKTSLILK GRNLTIPGTQ 720 IHCTSTGKYI SKEVLCSAYP GTIYDDSGVE TFDLPGEPDL ILGRCFIENR FRGNSFPVIV 780 ASSNVCQELR NLEVELEDSQ FPDISSDDQV HNPRQSKPRD QVLHFLNELG WLFQRAAACT 840 SSSRSDVSDL DLIQFSTPRF KYLLLFSSER DWCSLTKTLL DILAKRSLVS DELSQETMEM 900 LAEVHLLNRA VKRKSSRMVH LLVKFVVICP DNSKVYPFLP NFPGPGGLTP LHLAASIENA 960 EDIVDALTDD PQQIGLNCWQ SVLDDDGQSP ETYAKLRNHN SYNELVAQKL VDRKNSQVTI 1020 MVDKDEIGMD QSGNVGGVRA LQIQSCSQCA ILESGVLRKP LRSRGLLARP YIHSMLAIAA 1080 VCVCVCVFMR ALLRINSGRS FKWERLDYGT M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-33 | 172 | 255 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.1612 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf sheaths, and young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.6KG361900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973899.1 | 0.0 | squamosa promoter-binding-like protein 15 | ||||
Refseq | XP_012702492.1 | 0.0 | squamosa promoter-binding-like protein 15 | ||||
Swissprot | A2YX04 | 0.0 | SPL15_ORYSI; Squamosa promoter-binding-like protein 15 | ||||
Swissprot | Q6Z8M8 | 0.0 | SPL15_ORYSJ; Squamosa promoter-binding-like protein 15 | ||||
TrEMBL | A0A3L6QB90 | 0.0 | A0A3L6QB90_PANMI; Squamosa promoter-binding-like protein 15 | ||||
STRING | Pavir.Fa00457.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5456 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.6KG361900.1.p |