PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 402aa MW: 43494.8 Da PI: 6.1817

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG353000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	233	252	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Pavir.6KG353000.1.p 233 FSCPVCYKTFNRYNNMQMHM 252 89*****************9 PP
2	zf-C2H2	12.6	0.00041	319	339	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +Cgk F k + ++H +++ Pavir.6KG353000.1.p 319 CRKCGKAFAVKGDWRTHEKNC 339 *****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.42E-5	229	255	No hit	No description
SMART	SM00355	0.45	233	255	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.1E-6	233	252	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.743	233	260	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	235	255	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.03E-6	301	337	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.3E-5	304	337	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	82	317	337	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.621	317	337	IPR007087	Zinc finger, C2H2
SMART	SM00355	220	343	366	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MEDPYTSFFK NPYYYYTTSF PAAPAAHLPP PLPPYTSLYP AATPQYPACF FQPQPTLPPL 60 HDSPPSPPLR EALPLLSQSP TRGAREHVAA DYDSDDDADD FPREVAGSSA TPSAARAPLF 120 ADLNCMPSCC DDGGDPMDVE AGASTDDAAV ALRIGLPAAP ANGCGGTEAD LLSGLTGRGV 180 EAEEDEECKV DTGAGDGDEM VPLGFASTPI GRLNKGQYWI PTPAQILIGP TQFSCPVCYK 240 TFNRYNNMQM HMWGHGSQYR KGPESLRGVQ PTAMLRLPCY CCAAGCRNNI DHPRARPLKD 300 FRTLQTHYKR KHGLKPFLCR KCGKAFAVKG DWRTHEKNCG KLWYCLCGSE FKHKRSLKDH 360 ARAFGHGHGA FGCNVDGLDD DDEGAVSEIE QDGAGRSSAA R*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MEDPYTSFFK NPYYYYTTSF PAAPAAHLPP PLPPYTSLYP AATPQYPACF FQPQPTLPPL  60
HDSPPSPPLR EALPLLSQSP TRGAREHVAA DYDSDDDADD FPREVAGSSA TPSAARAPLF  120
ADLNCMPSCC DDGGDPMDVE AGASTDDAAV ALRIGLPAAP ANGCGGTEAD LLSGLTGRGV  180
EAEEDEECKV DTGAGDGDEM VPLGFASTPI GRLNKGQYWI PTPAQILIGP TQFSCPVCYK  240
TFNRYNNMQM HMWGHGSQYR KGPESLRGVQ PTAMLRLPCY CCAAGCRNNI DHPRARPLKD  300
FRTLQTHYKR KHGLKPFLCR KCGKAFAVKG DWRTHEKNCG KLWYCLCGSE FKHKRSLKDH  360
ARAFGHGHGA FGCNVDGLDD DDEGAVSEIE QDGAGRSSAA R*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG353000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096907	0.0	FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821697.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-122	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A3L6PSC8	0.0	A0A3L6PSC8_PANMI; Zinc finger protein WIP2-like
STRING	Pavir.Fa00506.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-115	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pavir.6KG353000.1.p

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]