PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 218aa MW: 23017.4 Da PI: 5.9297

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.6KG339000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	166.8	2.7e-52	78	181	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql+ fw++q +e +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaav+rt+ Pavir.6KG339000.1.p 78 QLNLFWAEQfreVEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAVARTE 167 7999**998899************************************************************************ PP NF-YC 88 ifdflvdivprdel 101 +fdflvdivprde Pavir.6KG339000.1.p 168 VFDFLVDIVPRDEA 181 **********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.49E-30	69	172	IPR009072	Histone-fold
Pfam	PF00808	2.3E-21	100	163	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.2E-36	101	178	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MEPKSTTPPP APVMGAPVAY PPPPAAAYPP PPAAAYAAGP YAHAPAAALY PPPPPPPPPP 60 HPSAAAVGQQ LGPAAQQQLN LFWAEQFREV EATTDFKNHN LPLARIKKIM KADEDVRMIA 120 AEAPVVFARA CEMFILELTH RGWAHAEENK RRTLQKSDIA AAVARTEVFD FLVDIVPRDE 180 AKDAEAAAAA GMGAGIPHPA AGMPAADPMG YYYVQPQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-57	86	178	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	156	RRTLQKS

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.6KG339000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU974115	1e-163	EU974115.1 Zea mays clone 440194 nuclear transcription factor Y subunit C-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973798.1	8e-91	nuclear transcription factor Y subunit C-6, partial
Swissprot	Q9XE33	8e-78	NFYC6_ORYSJ; Nuclear transcription factor Y subunit C-6
TrEMBL	A0A0Q3P9D1	6e-88	A0A0Q3P9D1_SETIT; Uncharacterized protein
TrEMBL	B6UA50	2e-87	B6UA50_MAIZE; Nuclear transcription factor Y subunit C-2
STRING	Pavir.Fb01850.1.p	1e-94	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3856	36	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54830.3	1e-58	nuclear factor Y, subunit C3

Link Out ? help Back to Top
Phytozome	Pavir.6KG339000.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]