PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG335800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 319aa    MW: 34529.9 Da    PI: 4.7941
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG335800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.61.4e-271058250
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         rien++nrqvtfskRrng+ KKA+ELSvLCd++va+++fs++g+l  +s
  Pavir.6KG335800.1.p 10 RIENNTNRQVTFSKRRNGLVKKAYELSVLCDIDVALLMFSPSGRLSHFS 58
                         8********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.198161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-29278IPR002100Transcription factor, MADS-box
CDDcd002651.49E-37275No hitNo description
PRINTSPR004048.0E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRVKLPIRR IENNTNRQVT FSKRRNGLVK KAYELSVLCD IDVALLMFSP SGRLSHFSGR  60
TGVEDVILRY MNLSDHDRGG CSAVKNPEYL VSMLQRLKRE GDMATQLANP GALNERIERE  120
IYSSQQQLHI YEERLRLFEP DPAAFGSTSE IDGCEKVLAD LLARVVQRKN YLLGDHMTPF  180
DPTASGMEGA DGAQMYTGQA EGMGTFAGDA ALWTAAGVGS DDPGHEMFGA ADPLMYLRDQ  240
DVYDATSQVA GLHGDPCAAA GEAEAEAEAW RQATCTELLS TLIPATPFPL MPVCHRAGAS  300
SFAASPRPAA TPEVMSPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-181101192Myocyte-specific enhancer factor 2B
1tqe_Q5e-181101192Myocyte-specific enhancer factor 2B
1tqe_R5e-181101192Myocyte-specific enhancer factor 2B
1tqe_S5e-181101192Myocyte-specific enhancer factor 2B
6c9l_A5e-181101192Myocyte-specific enhancer factor 2B
6c9l_B5e-181101192Myocyte-specific enhancer factor 2B
6c9l_C5e-181101192Myocyte-specific enhancer factor 2B
6c9l_D5e-181101192Myocyte-specific enhancer factor 2B
6c9l_E5e-181101192Myocyte-specific enhancer factor 2B
6c9l_F5e-181101192Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG335800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9751818e-53EU975181.1 Zea mays clone 483488 MADS-box protein AGL66 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973793.11e-170agamous-like MADS-box protein AGL66 isoform X4
SwissprotQ1PFC25e-67AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A3S6KAG01e-166A0A3S6KAG0_BAMML; MADS62
STRINGORUFI08G21330.21e-154(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.11e-68AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]