PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.6KG333000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 241aa    MW: 25160 Da    PI: 7.3034
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.6KG333000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.11.9e-3846103461
               zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          +  +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +s
  Pavir.6KG333000.1.p  46 EGDPCPRCESRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKKPSS 103
                          5679**************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-264699IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.42548102IPR003851Zinc finger, Dof-type
PfamPF027016.2E-3249100IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105086IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MQDSAAAAEP GRRPAQQQFA GVDLRRPKGY AAPAAAADAA AQVAAEGDPC PRCESRDTKF  60
CYYNNYNTSQ PRHFCKGCRR YWTKGGTLRN VPVGGGTRKK PSSSPPSSYA AATSSDKPRK  120
PFKKKRRVPP PHAAAATDAA PAADSAKTAT TTTPTPTTTD PASEITTELV VPAAEEEDSL  180
AHLLQPDVAL GLGISDFPAG KGLDVEPDSF EWPASFDLGA CWGSAGFADP DPAGLFLNLP  240
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122126KKKRR
2122127KKKRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.43648e-99leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues examined.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.6KG333000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822538.11e-114dof zinc finger protein MNB1A-like
SwissprotP385642e-81MNB1A_MAIZE; Dof zinc finger protein MNB1A
TrEMBLA0A2T8IHF21e-113A0A2T8IHF2_9POAL; Uncharacterized protein
STRINGSb07g028850.15e-80(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.14e-29DOF zinc finger protein 1
Publications ? help Back to Top
  1. Yanagisawa S,Izui K
    Molecular cloning of two DNA-binding proteins of maize that are structurally different but interact with the same sequence motif.
    J. Biol. Chem., 1993. 268(21): p. 16028-36
    [PMID:8340424]